Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PTGES3P3-201ENST00000511479 482 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.05□□□□□ -1.76
COL6A3P12111 RPL23AP92-201ENST00000603609 255 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC4.05□□□□□ -1.76
COL6A3P12111 BMS1P21-201ENST00000634565 365 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 AP000542.2-201ENST00000623199 6179 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
COL6A3P12111 LRRC37A9P-201ENST00000603850 5376 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
COL6A3P12111 REREP1Y-201ENST00000422655 198 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 NPM1P18-201ENST00000434232 732 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 REREP2Y-201ENST00000439103 200 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 RPL26P28-201ENST00000451325 435 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 RBMY2UP-201ENST00000453474 324 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 AC022655.2-201ENST00000577280 318 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.04□□□□□ -1.76
COL6A3P12111 AC107993.1-201ENST00000591343 684 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.04□□□□□ -1.76
COL6A3P12111 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.04□□□□□ -1.76
COL6A3P12111 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.04□□□□□ -1.76
COL6A3P12111 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.04□□□□□ -1.76
COL6A3P12111 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 AL034370.1-201ENST00000397254 1590 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 MAPK10-372ENST00000641954 3413 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 RNA5SP399-201ENST00000364003 117 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 AC005019.1-201ENST00000436455 431 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.04□□□□□ -1.76
COL6A3P12111 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.04□□□□□ -1.76
COL6A3P12111 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.04□□□□□ -1.76
COL6A3P12111 AC103843.2-201ENST00000530523 682 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.04□□□□□ -1.76
COL6A3P12111 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A3P12111 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.04□□□□□ -1.76
COL6A3P12111 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC4.04□□□□□ -1.76
COL6A3P12111 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.04□□□□□ -1.76
COL6A3P12111 AL034403.1-201ENST00000399414 885 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 VN1R48P-201ENST00000448149 1036 ntBASIC4.04□□□□□ -1.76
COL6A3P12111 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL6A3P12111 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.04□□□□□ -1.76
COL6A3P12111 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.04□□□□□ -1.76
COL6A3P12111 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 AC005831.1-201ENST00000624384 1697 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 AL137918.1-201ENST00000624542 1922 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC4.03□□□□□ -1.76
COL6A3P12111 AC107398.3-201ENST00000562284 7000 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
COL6A3P12111 AC083843.3-201ENST00000623679 2186 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 SNORD96B-201ENST00000386148 79 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 OR52Y1P-201ENST00000452418 828 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 RPL23AP12-201ENST00000467573 473 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.03□□□□□ -1.76
COL6A3P12111 AC108145.1-201ENST00000503770 153 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 ATP5A1P2-202ENST00000616464 443 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
COL6A3P12111 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 RNA5SP50-201ENST00000363731 107 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.03□□□□□ -1.76
COL6A3P12111 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.03□□□□□ -1.76
COL6A3P12111 ATP5HP2-201ENST00000433885 485 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 AL365440.1-201ENST00000436135 2167 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 Z74696.2-201ENST00000436514 498 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 OR2A20P-203ENST00000498397 1268 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 BNIP3P41-201ENST00000503774 571 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.03□□□□□ -1.76
COL6A3P12111 AC105031.1-201ENST00000518550 476 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.03□□□□□ -1.76
COL6A3P12111 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.03□□□□□ -1.76
COL6A3P12111 MIR8069-1-201ENST00000616627 86 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 MIR8069-2-201ENST00000621412 86 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.03□□□□□ -1.76
COL6A3P12111 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 AC012213.2-201ENST00000562917 4597 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A3P12111 MAPK10-253ENST00000641010 4072 ntBASIC4.03□□□□□ -1.76
COL6A3P12111 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.77
COL6A3P12111 SAMMSON-213ENST00000641336 1521 ntBASIC4.03□□□□□ -1.77
COL6A3P12111 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
COL6A3P12111 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL6A3P12111 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
COL6A3P12111 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
COL6A3P12111 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.02□□□□□ -1.77
COL6A3P12111 SNORD105B-201ENST00000458770 79 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms