Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC016550.1-201ENST00000505348 785 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 RNU6-1102P-201ENST00000516149 96 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AC067904.2-201ENST00000517322 1283 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC126365.2-201ENST00000580630 379 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC135178.6-201ENST00000605314 398 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AC120053.1-201ENST00000607706 736 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXD4P09016 AL391834.1-201ENST00000609609 560 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 AL163051.2-201ENST00000618976 735 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AC140113.4-201ENST00000622087 222 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AL356121.2-201ENST00000624715 780 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXD4P09016 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 ZNF137P-201ENST00000456718 1920 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD4P09016 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD4P09016 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.24□□□□□ -1.73
HOXD4P09016 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 AP000568.1-201ENST00000282964 442 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 SNORD115-48-201ENST00000364764 76 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 SNORA71.2-201ENST00000364941 134 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC140479.3-201ENST00000418944 1126 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AL121882.1-201ENST00000422893 417 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 CHIAP3-201ENST00000423668 1133 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXD4P09016 MTND2P21-201ENST00000436242 1042 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 RPS26P2-201ENST00000440331 348 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 RPL7AP61-201ENST00000443410 636 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AL035551.1-201ENST00000446931 348 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD4P09016 PPIAP21-201ENST00000464473 501 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 CABYRP1-201ENST00000465493 1045 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC104629.2-201ENST00000468627 598 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AL161747.1-201ENST00000480068 358 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXD4P09016 RPL23AP73-201ENST00000492507 471 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC025164.1-201ENST00000496249 478 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC010468.3-201ENST00000508225 458 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC010374.2-201ENST00000512933 535 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD4P09016 RNU2-30P-201ENST00000516209 141 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 VTA1P2-201ENST00000520205 911 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 NPM1P6-201ENST00000521088 871 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD4P09016 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD4P09016 OR5M2P-201ENST00000529003 936 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC113192.3-201ENST00000529152 742 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
HOXD4P09016 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXD4P09016 AC069061.3-201ENST00000582254 823 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC090330.1-201ENST00000588646 764 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 ZNF92P2-201ENST00000600543 1059 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 BMS1P7-201ENST00000602440 1052 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 ABI1P1-201ENST00000603375 1120 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AL139395.1-201ENST00000603662 160 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 BNIP3P31-201ENST00000604515 566 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 OR7A19P-201ENST00000608051 733 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD4P09016 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD4P09016 AC025016.1-201ENST00000616746 682 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AL035461.2-201ENST00000619201 524 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 AC068831.8-201ENST00000620171 435 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD4P09016 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD4P09016 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD4P09016 AL592148.3-201ENST00000608771 2646 ntBASIC4.24□□□□□ -1.73
HOXD4P09016 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXD4P09016 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD4P09016 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD4P09016 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXD4P09016 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD4P09016 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD4P09016 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD4P09016 IGKV7-3-201ENST00000357453 298 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 SNORA63.3-201ENST00000362682 132 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 RNU1-20P-201ENST00000363314 162 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD4P09016 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD4P09016 MT-TP-201ENST00000387461 68 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD4P09016 RPL23AP48-201ENST00000406913 488 ntBASIC4.23□□□□□ -1.73
HOXD4P09016 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD4P09016 VN1R37P-201ENST00000419096 748 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms