| CNTN3 | Q9P232 | DCAF17-212 | ENST00000611110 | 975 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | U1.31-201 | ENST00000620022 | 160 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CDKN3-212 | ENST00000620759 | 196 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC010338.1-201 | ENST00000621823 | 717 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC005618.4-201 | ENST00000625053 | 554 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | WASF3-AS1-206 | ENST00000626779 | 381 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | FLG-AS1-207 | ENST00000628475 | 497 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ECHDC1-222 | ENST00000531967 | 2585 nt | APPRIS ALT2 TSL 2 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RBM44-206 | ENST00000611254 | 1427 nt | TSL 2 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MLIP-AS1-201 | ENST00000434196 | 1534 nt | TSL 2 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ZNF402P-201 | ENST00000404435 | 3100 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | PSMC6-219 | ENST00000612399 | 1590 nt | APPRIS P2 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC245100.4-204 | ENST00000635587 | 1555 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | GTF3C3-202 | ENST00000409364 | 1736 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | BIRC6-201 | ENST00000421745 | 15703 nt | APPRIS P1 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC104024.1-201 | ENST00000428142 | 2201 nt | TSL 2 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ASAH1-232 | ENST00000636691 | 2472 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MTAP-210 | ENST00000580900 | 7557 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | DMXL1-215 | ENST00000539542 | 11236 nt | TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC01153-201 | ENST00000429809 | 2864 nt | TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | OR10G4-202 | ENST00000641521 | 3623 nt | APPRIS P1 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL662795.2-201 | ENST00000624252 | 3706 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RBM48-202 | ENST00000481551 | 4093 nt | TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | PSD3-219 | ENST00000614430 | 6136 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | SORBS1-205 | ENST00000371227 | 7279 nt | APPRIS ALT2 TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | NCOR1-201 | ENST00000268712 | 10720 nt | APPRIS P1 TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | IL3-201 | ENST00000296870 | 1050 nt | APPRIS P1 TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | DSCR8-201 | ENST00000357704 | 552 nt | APPRIS P5 TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CRP-204 | ENST00000368112 | 787 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LCN1P2-201 | ENST00000372030 | 223 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RNU6-1103P-201 | ENST00000384150 | 107 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RPL31P1-201 | ENST00000398116 | 372 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | DSCR8-202 | ENST00000400477 | 534 nt | APPRIS ALT2 TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MTERF1-202 | ENST00000406735 | 1639 nt | APPRIS ALT2 TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC073264.1-201 | ENST00000411508 | 416 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ZNRF3-IT1-201 | ENST00000412798 | 674 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RPS3AP9-201 | ENST00000417027 | 792 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | VNN3-207 | ENST00000425515 | 1761 nt | TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC01707-201 | ENST00000425517 | 627 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL353608.2-201 | ENST00000425587 | 340 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TMEM246-AS1-202 | ENST00000425734 | 466 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC079807.1-201 | ENST00000429993 | 481 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC022022.1-201 | ENST00000430304 | 178 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC008067.1-203 | ENST00000430876 | 359 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC109583.1-201 | ENST00000432156 | 268 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC002504.1-201 | ENST00000438281 | 691 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AP000365.1-201 | ENST00000438850 | 546 nt | TSL 4 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ATP5LP2-201 | ENST00000440646 | 311 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC018467.1-203 | ENST00000440785 | 506 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TXNP5-201 | ENST00000441043 | 315 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CFL1P4-201 | ENST00000451536 | 498 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RAD23BP3-201 | ENST00000454157 | 1152 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL021940.1-201 | ENST00000454271 | 677 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC103563.5-201 | ENST00000455643 | 364 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | BX322784.1-201 | ENST00000455793 | 1077 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | PMCHL2-203 | ENST00000457791 | 237 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC087312.1-201 | ENST00000471411 | 480 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ADAMTS9-AS1-203 | ENST00000471990 | 1606 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | EIF3LP3-201 | ENST00000495197 | 822 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CASC11-201 | ENST00000502463 | 3301 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC025458.1-201 | ENST00000506046 | 166 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | POU5F1P7-201 | ENST00000508759 | 541 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MOCS2-206 | ENST00000510818 | 1251 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC097460.1-201 | ENST00000514624 | 590 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RNA5SP116-201 | ENST00000516132 | 98 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RN7SKP238-201 | ENST00000516483 | 249 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | SNORA48.10-201 | ENST00000516965 | 160 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC008429.4-201 | ENST00000521201 | 182 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC012103.1-201 | ENST00000522281 | 780 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC091185.1-201 | ENST00000523840 | 528 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TRIM77BP-201 | ENST00000524985 | 1119 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AP002001.1-201 | ENST00000526101 | 1759 nt | TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CBX3P5-201 | ENST00000552017 | 521 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC007956.1-201 | ENST00000555623 | 542 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC025678.1-201 | ENST00000567861 | 338 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC012146.1-204 | ENST00000570712 | 426 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC005703.3-201 | ENST00000579159 | 373 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC01899-201 | ENST00000580323 | 312 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AP001011.1-201 | ENST00000583546 | 690 nt | TSL 3 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MOCS2-210 | ENST00000584946 | 736 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL138895.2-201 | ENST00000603019 | 178 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | BNIP3P11-201 | ENST00000603878 | 563 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL138900.3-201 | ENST00000607010 | 629 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC141002.1-201 | ENST00000607025 | 279 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | BLOC1S2-205 | ENST00000614731 | 2634 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC009233.1-201 | ENST00000616477 | 371 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | THRA1/BTR-204 | ENST00000621191 | 513 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC005225.5-201 | ENST00000623547 | 2225 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC022400.9-201 | ENST00000623633 | 273 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | VPS8-228 | ENST00000628962 | 207 nt | TSL 5 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AP000550.3-201 | ENST00000637734 | 379 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ASNSP1-204 | ENST00000641977 | 1664 nt | BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | NIT2-201 | ENST00000394140 | 7289 nt | APPRIS P1 TSL 1 (best) BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TNKS-206 | ENST00000518281 | 3897 nt | TSL 2 BASIC | 6.63 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | HHLA2-211 | ENST00000619531 | 2548 nt | APPRIS P3 TSL 5 BASIC | 6.62 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC068769.1-201 | ENST00000474767 | 2426 nt | BASIC | 6.62 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC024587.1-201 | ENST00000505925 | 2157 nt | BASIC | 6.62 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | PHTF2-207 | ENST00000424760 | 1977 nt | TSL 2 BASIC | 6.62 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC073130.1-201 | ENST00000457033 | 1958 nt | TSL 2 BASIC | 6.62 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC096921.2-201 | ENST00000561507 | 1916 nt | BASIC | 6.62 | □□□□□ -1.35 | | |