Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 AC006349.1-201ENST00000555526 235 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 RPL23AP97-201ENST00000568955 471 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 RPL23AP57-201ENST00000332361 466 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 DDX39BP2-208ENST00000453923 258 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 Vault.1-201ENST00000516474 102 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 IGKV2-38-201ENST00000517443 247 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AC022695.1-201ENST00000522089 237 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AP000473.2-201ENST00000602659 1537 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 XGY1-201ENST00000381172 446 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 ZNF602P-201ENST00000405929 924 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 CYCSP35-201ENST00000451978 304 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AL133162.1-201ENST00000463228 453 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 AC138932.5-201ENST00000617759 563 ntBASIC3.84□□□□□ -1.79
VPS13AQ96RL7 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS13AQ96RL7 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 IL6STP1-201ENST00000346911 1020 ntBASIC3.84□□□□□ -1.8
VPS13AQ96RL7 RNA5SP51-201ENST00000364750 119 ntBASIC3.84□□□□□ -1.8
VPS13AQ96RL7 MRPL35P4-201ENST00000453682 566 ntBASIC3.84□□□□□ -1.8
VPS13AQ96RL7 AP001992.1-205ENST00000462248 379 ntBASIC3.84□□□□□ -1.8
VPS13AQ96RL7 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.84□□□□□ -1.8
VPS13AQ96RL7 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 BDP1P-201ENST00000582658 1990 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 RPL5P2-201ENST00000429598 854 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 Z74696.2-201ENST00000436514 498 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 RNA5SP497-201ENST00000516081 97 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 IGHV3-32-201ENST00000519182 355 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AC119744.1-201ENST00000454746 1715 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AC069306.1-201ENST00000507006 843 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 HMGN1P11-201ENST00000508668 303 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AC118465.1-201ENST00000513820 1271 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 AL391497.1-201ENST00000608671 547 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 OR51H2P-202ENST00000641424 3046 ntBASIC3.83□□□□□ -1.8
VPS13AQ96RL7 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS13AQ96RL7 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 OTUD4P1-201ENST00000237841 3067 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 RNA5SP126-201ENST00000365092 109 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AC073387.1-201ENST00000453261 709 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AL352979.3-201ENST00000553515 247 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms