Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS35Q96QK1 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.46□□□□□ -1.7
VPS35Q96QK1 A2MP1-204ENST00000566278 4130 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC011266.1-201ENST00000624119 3569 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 MIR448-201ENST00000362131 111 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 RNU4-39P-201ENST00000362455 127 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 HSPD1P16-201ENST00000402302 394 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 ELOCP19-201ENST00000411919 318 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 RANP4-201ENST00000413361 655 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 CENPIP1-201ENST00000425713 902 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS35Q96QK1 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 RNU7-27P-201ENST00000459281 62 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC053481.1-201ENST00000467217 306 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC108022.1-201ENST00000493466 478 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC083829.1-201ENST00000503756 657 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC108120.2-201ENST00000512973 294 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC015795.1-201ENST00000513669 327 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC008083.2-201ENST00000546707 476 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AP001160.4-201ENST00000596971 382 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC090181.2-201ENST00000602975 672 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC005191.1-201ENST00000603950 358 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AL049844.2-201ENST00000604280 628 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC010200.2-201ENST00000605098 235 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC012557.1-201ENST00000607115 611 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 HSPD1P14-201ENST00000432666 1618 ntBASIC4.45□□□□□ -1.7
VPS35Q96QK1 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.45□□□□□ -1.7
VPS35Q96QK1 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS35Q96QK1 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS35Q96QK1 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS35Q96QK1 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS35Q96QK1 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 RNA5SP151-201ENST00000365632 117 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AL356387.2-201ENST00000422272 243 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 EIF4EP1-201ENST00000422311 642 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC068287.1-201ENST00000430283 295 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 RPL23AP25-201ENST00000430973 463 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 PPIAP13-201ENST00000434706 478 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 snoU13.1-201ENST00000459157 104 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC005912.1-201ENST00000495392 255 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 OR51K1P-201ENST00000510214 950 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC018552.3-201ENST00000567416 561 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC068790.4-201ENST00000602474 263 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC119501.1-201ENST00000603646 475 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC008745.1-201ENST00000604064 271 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC007390.2-201ENST00000606229 3803 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AP002360.3-201ENST00000607673 710 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 uc_338.9-201ENST00000617424 182 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 MIR6891-201ENST00000618788 93 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 RMST_9.1-201ENST00000619945 193 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC091905.2-201ENST00000623143 306 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.44□□□□□ -1.7
VPS35Q96QK1 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
VPS35Q96QK1 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS35Q96QK1 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AP001002.1-201ENST00000625148 1513 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 OR5T3-201ENST00000303059 1023 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 RNU1-63P-201ENST00000383902 164 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 NPM1P10-201ENST00000398310 865 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms