Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC092170.1-201ENST00000440211 356 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 GTF3AP5-201ENST00000442645 697 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AP000797.2-201ENST00000475768 606 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC011005.3-201ENST00000491624 395 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 OR7E128P-201ENST00000532736 1024 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AL121594.4-201ENST00000556211 1196 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC040958.1-201ENST00000561102 201 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC106785.1-201ENST00000565935 262 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC034105.4-201ENST00000568304 277 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 RN7SL290P-201ENST00000578661 300 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 KPNA2P3-201ENST00000584190 848 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 RPAP2P1-201ENST00000603626 1168 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC093765.1-201ENST00000603758 881 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC055764.2-201ENST00000610089 670 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AL121873.1-201ENST00000616013 524 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 U6.107-201ENST00000637108 79 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC027228.2-201ENST00000567141 2154 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC096656.1-201ENST00000623826 1364 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 AC092747.4-201ENST00000620519 1861 ntBASIC4.86□□□□□ -1.63
COL28A1Q2UY09 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL28A1Q2UY09 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC017079.1-201ENST00000333650 415 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 UBBP2-201ENST00000376781 231 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 ZNF602P-201ENST00000405929 924 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 RNU4-25P-201ENST00000410569 230 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC114973.1-201ENST00000429057 632 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AL359265.2-201ENST00000434367 631 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC090018.1-201ENST00000434369 367 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC068135.1-201ENST00000446164 246 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AL359073.1-201ENST00000448036 403 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC010326.1-201ENST00000462726 602 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 RPL23AP12-201ENST00000467573 473 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC013356.1-201ENST00000489027 564 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC022133.1-201ENST00000490961 571 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC020890.1-201ENST00000491837 504 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC010627.1-201ENST00000503819 1294 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC010460.2-201ENST00000509054 677 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC016559.2-201ENST00000510759 359 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 RNA5SP464-201ENST00000516251 108 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC012400.1-201ENST00000518452 381 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AP001207.2-201ENST00000519490 539 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 MED28P5-201ENST00000528254 438 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 MTND1P8-201ENST00000571424 950 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AL512782.1-201ENST00000603093 364 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AC067959.1-201ENST00000604334 379 ntBASIC4.85□□□□□ -1.63
COL28A1Q2UY09 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms