Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 IGLVIV-64-201ENST00000518581 301 ntBASIC5.82□□□□□ -1.48
RNF4P78317 MTND1P35-201ENST00000526739 508 ntBASIC5.82□□□□□ -1.48
RNF4P78317 OR5AP1P-201ENST00000529730 940 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AC036111.2-201ENST00000533247 901 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.82□□□□□ -1.48
RNF4P78317 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.82□□□□□ -1.48
RNF4P78317 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.82□□□□□ -1.48
RNF4P78317 BNIP3P11-201ENST00000603878 563 ntBASIC5.82□□□□□ -1.48
RNF4P78317 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 AC128687.2-201ENST00000609657 566 ntBASIC5.82□□□□□ -1.48
RNF4P78317 DLEU1_2.1-201ENST00000617920 342 ntBASIC5.82□□□□□ -1.48
RNF4P78317 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
RNF4P78317 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF4P78317 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.82□□□□□ -1.48
RNF4P78317 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF4P78317 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 BIN2P1-201ENST00000504996 1530 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 AL512646.1-201ENST00000269395 1077 ntBASIC5.81□□□□□ -1.48
RNF4P78317 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
RNF4P78317 RNU1-149P-201ENST00000390870 161 ntBASIC5.81□□□□□ -1.48
RNF4P78317 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.81□□□□□ -1.48
RNF4P78317 PEX12P1-201ENST00000400284 1048 ntBASIC5.81□□□□□ -1.48
RNF4P78317 MIR320C1-201ENST00000408566 88 ntBASIC5.81□□□□□ -1.48
RNF4P78317 Y_RNA.608-201ENST00000410647 95 ntBASIC5.81□□□□□ -1.48
RNF4P78317 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 RPS3AP9-201ENST00000417027 792 ntBASIC5.81□□□□□ -1.48
RNF4P78317 USP9YP27-201ENST00000418455 438 ntBASIC5.81□□□□□ -1.48
RNF4P78317 CYP4F30P-202ENST00000420048 405 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 TIMM9P3-201ENST00000428659 274 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.81□□□□□ -1.48
RNF4P78317 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 AL512605.1-202ENST00000441919 381 ntBASIC5.81□□□□□ -1.48
RNF4P78317 MTCO1P27-201ENST00000448269 226 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 HMGB1P7-201ENST00000450921 612 ntBASIC5.81□□□□□ -1.48
RNF4P78317 HIGD1AP16-201ENST00000450986 258 ntBASIC5.81□□□□□ -1.48
RNF4P78317 RANP2-201ENST00000456833 229 ntBASIC5.81□□□□□ -1.48
RNF4P78317 RPL21P71-201ENST00000465598 459 ntBASIC5.81□□□□□ -1.48
RNF4P78317 HMGB1P29-201ENST00000505659 499 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 AC024589.1-201ENST00000512207 263 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC026412.2-201ENST00000512270 1075 ntBASIC5.81□□□□□ -1.48
RNF4P78317 HSD3BP3-201ENST00000514706 994 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 AL121594.2-201ENST00000541658 472 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 AC107958.1-201ENST00000556576 290 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 AL133457.1-201ENST00000564251 987 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 UBE2V2P2-201ENST00000587677 504 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC008752.3-201ENST00000588113 712 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC060780.3-201ENST00000589464 80 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.81□□□□□ -1.48
RNF4P78317 AC018695.5-201ENST00000605872 315 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC006924.1-201ENST00000610750 559 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AC010133.1-201ENST00000615809 842 ntBASIC5.81□□□□□ -1.48
RNF4P78317 TCL6_3.1-201ENST00000619064 137 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms