Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
MSX1P28360 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX1P28360 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.43□□□□□ -1.38
MSX1P28360 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX1P28360 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX1P28360 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 MAPK10-323ENST00000641493 3207 ntBASIC6.42□□□□□ -1.38
MSX1P28360 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 RAD17P2-201ENST00000451754 1977 ntBASIC6.42□□□□□ -1.38
MSX1P28360 DDX18P4-201ENST00000511690 1966 ntBASIC6.42□□□□□ -1.38
MSX1P28360 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 AC006600.2-201ENST00000624834 2506 ntBASIC6.42□□□□□ -1.38
MSX1P28360 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 THUMPD3P1-201ENST00000506556 1480 ntBASIC6.42□□□□□ -1.38
MSX1P28360 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX1P28360 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 Y_RNA.148-201ENST00000363557 117 ntBASIC6.42□□□□□ -1.38
MSX1P28360 Y_RNA.158-201ENST00000363651 101 ntBASIC6.42□□□□□ -1.38
MSX1P28360 RNU4-20P-201ENST00000365601 151 ntBASIC6.42□□□□□ -1.38
MSX1P28360 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 RNU6-1013P-201ENST00000384180 107 ntBASIC6.42□□□□□ -1.38
MSX1P28360 MIR199B-201ENST00000384849 110 ntBASIC6.42□□□□□ -1.38
MSX1P28360 MIR187-201ENST00000385062 109 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AL359715.1-201ENST00000404330 555 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AL121834.1-202ENST00000404494 277 ntBASIC6.42□□□□□ -1.38
MSX1P28360 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.42□□□□□ -1.38
MSX1P28360 RN7SKP148-201ENST00000410179 275 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AL672212.1-201ENST00000422246 400 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX1P28360 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 AC073069.1-201ENST00000428657 441 ntBASIC6.42□□□□□ -1.38
MSX1P28360 FTLP17-201ENST00000432567 525 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX1P28360 KF459542.1-201ENST00000450908 553 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX1P28360 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX1P28360 RPS14P8-201ENST00000478778 369 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AC034222.1-201ENST00000494052 532 ntBASIC6.42□□□□□ -1.38
MSX1P28360 PABPC1P1-201ENST00000506347 591 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
MSX1P28360 RN7SKP233-201ENST00000517005 110 ntBASIC6.42□□□□□ -1.38
MSX1P28360 RPL7P20-201ENST00000520308 745 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AC107934.1-201ENST00000522215 217 ntBASIC6.42□□□□□ -1.38
MSX1P28360 OR5B10P-201ENST00000532869 642 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX1P28360 DUX4L52-201ENST00000549363 777 ntBASIC6.42□□□□□ -1.38
MSX1P28360 SULT1C2P1-202ENST00000562418 459 ntBASIC6.42□□□□□ -1.38
MSX1P28360 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
MSX1P28360 AL512605.2-201ENST00000592972 256 ntBASIC6.42□□□□□ -1.38
MSX1P28360 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX1P28360 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX1P28360 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX1P28360 AL365434.2-201ENST00000607979 234 ntBASIC6.42□□□□□ -1.38
MSX1P28360 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 AL161912.4-201ENST00000623889 2468 ntBASIC6.42□□□□□ -1.38
MSX1P28360 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
MSX1P28360 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 AC010401.2-201ENST00000575137 4934 ntBASIC6.42□□□□□ -1.38
MSX1P28360 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
MSX1P28360 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX1P28360 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX1P28360 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 ZNF658B-201ENST00000602828 3408 ntBASIC6.41□□□□□ -1.38
MSX1P28360 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX1P28360 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
MSX1P28360 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
MSX1P28360 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX1P28360 DHFRP6-201ENST00000401776 268 ntBASIC6.41□□□□□ -1.38
MSX1P28360 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.41□□□□□ -1.38
MSX1P28360 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX1P28360 HMGB3P10-201ENST00000434734 572 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms