Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5□□□□□ -1.61
COL5A3P25940 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5□□□□□ -1.61
COL5A3P25940 RPL23AP87-202ENST00000573039 466 ntBASIC5□□□□□ -1.61
COL5A3P25940 SLC25A36P1-201ENST00000590111 465 ntBASIC5□□□□□ -1.61
COL5A3P25940 AC002069.2-201ENST00000603580 883 ntBASIC5□□□□□ -1.61
COL5A3P25940 AC138907.10-201ENST00000623708 983 ntBASIC5□□□□□ -1.61
COL5A3P25940 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5□□□□□ -1.61
COL5A3P25940 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A3P25940 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC4.99□□□□□ -1.61
COL5A3P25940 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A3P25940 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A3P25940 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A3P25940 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A3P25940 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
COL5A3P25940 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.99□□□□□ -1.61
COL5A3P25940 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A3P25940 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.99□□□□□ -1.61
COL5A3P25940 MIR199A2-201ENST00000385289 110 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.99□□□□□ -1.61
COL5A3P25940 AC004448.2-201ENST00000422360 586 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A3P25940 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.99□□□□□ -1.61
COL5A3P25940 RN7SL293P-201ENST00000481765 281 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 AC106707.2-201ENST00000484182 374 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 SETP14-201ENST00000497538 873 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 MTND1P6-201ENST00000523621 946 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.99□□□□□ -1.61
COL5A3P25940 AC025627.2-201ENST00000576220 160 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 AL031666.3-201ENST00000609320 1006 ntBASIC4.99□□□□□ -1.61
COL5A3P25940 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.99□□□□□ -1.61
COL5A3P25940 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
COL5A3P25940 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.99□□□□□ -1.61
COL5A3P25940 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A3P25940 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL5A3P25940 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 HSPD1P11-201ENST00000508643 1702 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.98□□□□□ -1.61
COL5A3P25940 SNORD3H-201ENST00000384486 214 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 NDUFB4P4-201ENST00000404822 243 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 AC073335.1-201ENST00000427776 363 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A3P25940 CDH12P2-201ENST00000504393 298 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A3P25940 RN7SKP18-201ENST00000516005 275 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 MIR3922-201ENST00000585192 84 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A3P25940 AC023509.5-201ENST00000617434 807 ntBASIC4.98□□□□□ -1.61
COL5A3P25940 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
COL5A3P25940 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A3P25940 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A3P25940 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A3P25940 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A3P25940 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL5A3P25940 SNORD35B-201ENST00000363660 87 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 RNA5SP72-201ENST00000364442 117 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 SOD2P1-201ENST00000396543 562 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 AL359643.1-201ENST00000404109 423 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 RNU2-65P-201ENST00000410162 185 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A3P25940 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A3P25940 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 HMGN2P27-201ENST00000427352 270 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.97□□□□□ -1.61
COL5A3P25940 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 AC007599.1-201ENST00000568688 1174 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 MIR7975-201ENST00000619350 68 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 AC055839.1-201ENST00000634467 498 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A3P25940 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.97□□□□□ -1.61
COL5A3P25940 AL672167.1-205ENST00000641112 3080 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A3P25940 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A3P25940 CAB39P1-201ENST00000502277 460 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 HSPD1P15-201ENST00000505573 1122 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A3P25940 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 AC011471.1-201ENST00000585766 187 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A3P25940 AL442067.2-201ENST00000614033 363 ntBASIC4.97□□□□□ -1.61
COL5A3P25940 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
COL5A3P25940 MARK2P15-201ENST00000432204 2186 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms