Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.44□□□□□ -1.22
COL9A1P20849 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC7.44□□□□□ -1.22
COL9A1P20849 AC004792.1-201ENST00000614523 137 ntBASIC7.44□□□□□ -1.22
COL9A1P20849 AL138825.1-201ENST00000618587 192 ntBASIC7.44□□□□□ -1.22
COL9A1P20849 AC103705.1-201ENST00000619013 241 ntBASIC7.44□□□□□ -1.22
COL9A1P20849 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC7.44□□□□□ -1.22
COL9A1P20849 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC7.44□□□□□ -1.22
COL9A1P20849 AC010325.3-201ENST00000641084 394 ntBASIC7.44□□□□□ -1.22
COL9A1P20849 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 NOTCH2-207ENST00000602566 5046 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC7.44□□□□□ -1.22
COL9A1P20849 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC7.44□□□□□ -1.22
COL9A1P20849 MAPK10-244ENST00000639972 2818 ntTSL 5 BASIC7.44□□□□□ -1.22
COL9A1P20849 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
COL9A1P20849 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
COL9A1P20849 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL9A1P20849 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 EIF4BP5-201ENST00000567338 1795 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 OR10W1-201ENST00000395079 1469 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
COL9A1P20849 AC067968.1-201ENST00000591793 3766 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
COL9A1P20849 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 AC123769.1-201ENST00000530992 3192 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AC006116.1-201ENST00000587908 2171 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 NME8-201ENST00000199447 2312 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 MAPK10-354ENST00000641823 2732 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 RPL12P13-201ENST00000310055 497 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 SNORA74A-201ENST00000364089 198 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 RN7SKP235-201ENST00000410662 305 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AL603650.1-201ENST00000412680 240 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 GAPDHP59-201ENST00000435908 267 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AC098831.1-201ENST00000440661 216 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 FUNDC2P2-202ENST00000443452 493 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 RPL23AP43-201ENST00000446445 471 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AL133351.3-201ENST00000454998 193 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AL445687.2-201ENST00000458156 728 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 CREM-226ENST00000469949 721 ntTSL 3 BASIC7.43□□□□□ -1.22
COL9A1P20849 AC022215.1-201ENST00000481770 362 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 DEFB109F-201ENST00000491870 277 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 RPL19P11-201ENST00000495944 589 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 OR51A1P-201ENST00000511110 946 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC7.43□□□□□ -1.22
COL9A1P20849 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC7.43□□□□□ -1.22
COL9A1P20849 IGHV7-34-1-201ENST00000519200 350 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC7.43□□□□□ -1.22
COL9A1P20849 HSPE1P20-201ENST00000538133 289 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 SETP2-201ENST00000553886 926 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC7.43□□□□□ -1.22
COL9A1P20849 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC7.43□□□□□ -1.22
COL9A1P20849 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC7.43□□□□□ -1.22
COL9A1P20849 AC090651.1-201ENST00000567865 634 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 MIR378C-201ENST00000578683 81 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 MIR5583-1-201ENST00000580941 59 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 MIR4437-201ENST00000581331 60 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 GLUD1P2-201ENST00000583339 201 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 AC099667.1-201ENST00000624222 469 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 OR7E161P-202ENST00000641994 1033 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 NUDT13-202ENST00000357321 2102 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
COL9A1P20849 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 DHX8-202ENST00000540306 3809 ntTSL 2 BASIC7.43□□□□□ -1.22
COL9A1P20849 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 SEM1-215ENST00000615352 2637 ntTSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL9A1P20849 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC7.43□□□□□ -1.22
COL9A1P20849 ANKRD20A5P-201ENST00000431648 3556 ntBASIC7.43□□□□□ -1.22
COL9A1P20849 LINC02159-202ENST00000518580 2323 ntTSL 2 BASIC7.43□□□□□ -1.22
COL9A1P20849 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 AC000099.1-202ENST00000413812 1912 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC7.42□□□□□ -1.22
COL9A1P20849 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 TMCC1P1-201ENST00000518897 1980 ntBASIC7.42□□□□□ -1.22
COL9A1P20849 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
COL9A1P20849 MTCO1P24-201ENST00000515438 1558 ntBASIC7.42□□□□□ -1.22
COL9A1P20849 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
COL9A1P20849 GPM6B-205ENST00000454189 3957 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 GPD2-202ENST00000409125 2661 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC7.42□□□□□ -1.22
COL9A1P20849 BDNF-206ENST00000395983 3776 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL9A1P20849 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.42□□□□□ -1.22
COL9A1P20849 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms