Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.63□□□□□ -1.67
MSH3P20585 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.63□□□□□ -1.67
MSH3P20585 HMGB3P9-201ENST00000441799 583 ntBASIC4.63□□□□□ -1.67
MSH3P20585 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 Z80107.2-201ENST00000445127 392 ntBASIC4.63□□□□□ -1.67
MSH3P20585 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.63□□□□□ -1.67
MSH3P20585 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
MSH3P20585 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.63□□□□□ -1.67
MSH3P20585 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 AC010476.1-201ENST00000519111 851 ntBASIC4.63□□□□□ -1.67
MSH3P20585 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.63□□□□□ -1.67
MSH3P20585 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.63□□□□□ -1.67
MSH3P20585 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.63□□□□□ -1.67
MSH3P20585 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.63□□□□□ -1.67
MSH3P20585 SUMO2P14-201ENST00000604488 293 ntBASIC4.63□□□□□ -1.67
MSH3P20585 AC116651.1-201ENST00000609724 556 ntBASIC4.63□□□□□ -1.67
MSH3P20585 AL161616.1-201ENST00000611867 286 ntBASIC4.63□□□□□ -1.67
MSH3P20585 AC078880.5-201ENST00000617845 421 ntBASIC4.63□□□□□ -1.67
MSH3P20585 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 MTND5P11-201ENST00000511037 1812 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC006971.1-201ENST00000407916 4486 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AL672167.1-205ENST00000641112 3080 ntBASIC4.62□□□□□ -1.67
MSH3P20585 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 AC108467.2-201ENST00000617640 1597 ntBASIC4.62□□□□□ -1.67
MSH3P20585 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 SNORA71.2-201ENST00000364941 134 ntBASIC4.62□□□□□ -1.67
MSH3P20585 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 MIR921-201ENST00000401133 56 ntBASIC4.62□□□□□ -1.67
MSH3P20585 HMGB3P19-201ENST00000403971 560 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 XKRYP4-201ENST00000414395 483 ntBASIC4.62□□□□□ -1.67
MSH3P20585 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.62□□□□□ -1.67
MSH3P20585 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 RPS27P5-201ENST00000444247 244 ntBASIC4.62□□□□□ -1.67
MSH3P20585 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 TDGF1P1-201ENST00000445734 527 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.62□□□□□ -1.67
MSH3P20585 XKRYP5-201ENST00000449659 483 ntBASIC4.62□□□□□ -1.67
MSH3P20585 HMGB1P26-201ENST00000452520 628 ntBASIC4.62□□□□□ -1.67
MSH3P20585 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 AC104763.1-201ENST00000475274 360 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC104982.1-201ENST00000478775 574 ntBASIC4.62□□□□□ -1.67
MSH3P20585 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
MSH3P20585 AC098799.3-201ENST00000506095 438 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC133963.2-201ENST00000513686 578 ntBASIC4.62□□□□□ -1.67
MSH3P20585 IGHV3-63-201ENST00000518422 341 ntBASIC4.62□□□□□ -1.67
MSH3P20585 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.62□□□□□ -1.67
MSH3P20585 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.62□□□□□ -1.67
MSH3P20585 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.62□□□□□ -1.67
MSH3P20585 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 AC008507.2-201ENST00000588402 1176 ntBASIC4.62□□□□□ -1.67
MSH3P20585 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.62□□□□□ -1.67
MSH3P20585 COX6CP4-201ENST00000605798 228 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC112503.1-201ENST00000608436 391 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC008147.4-201ENST00000617570 1204 ntBASIC4.62□□□□□ -1.67
MSH3P20585 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 AC010300.1-201ENST00000600671 5134 ntBASIC4.62□□□□□ -1.67
MSH3P20585 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSH3P20585 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
MSH3P20585 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
MSH3P20585 DDX18P4-201ENST00000511690 1966 ntBASIC4.62□□□□□ -1.67
MSH3P20585 AC107027.3-201ENST00000565095 3473 ntBASIC4.62□□□□□ -1.67
MSH3P20585 CASC19-204ENST00000641001 2055 ntBASIC4.61□□□□□ -1.67
MSH3P20585 HSPD1P14-201ENST00000432666 1618 ntBASIC4.61□□□□□ -1.67
MSH3P20585 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.61□□□□□ -1.67
MSH3P20585 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 AL031119.1-201ENST00000404707 1879 ntBASIC4.61□□□□□ -1.67
MSH3P20585 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 OR56B2P-201ENST00000317102 954 ntBASIC4.61□□□□□ -1.67
MSH3P20585 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
MSH3P20585 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.61□□□□□ -1.67
MSH3P20585 RN7SKP106-201ENST00000410832 272 ntBASIC4.61□□□□□ -1.67
MSH3P20585 RNU4-74P-201ENST00000411280 161 ntBASIC4.61□□□□□ -1.67
MSH3P20585 VN1R51P-201ENST00000411675 945 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms