Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC063962.1-201ENST00000608199 521 ntBASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 AC006924.1-201ENST00000610750 559 ntBASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIMD1Q9UGP4 AP002800.1-201ENST00000624982 2225 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 WBP11P1-201ENST00000562560 1931 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AP003486.1-201ENST00000525716 3994 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 RNU6-28P-201ENST00000362378 107 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 RN7SKP174-201ENST00000363803 330 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 SNORA70G-201ENST00000383923 142 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 MIR514A2-201ENST00000385131 88 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 MIR514A3-201ENST00000385132 88 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 RNU6-316P-201ENST00000391027 107 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 GEMIN2P2-201ENST00000418195 715 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 GAPDHP37-201ENST00000442317 968 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC002075.1-201ENST00000457396 676 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 MTND5P22-201ENST00000458380 195 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 HSPD1P15-201ENST00000505573 1122 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 RPL10P18-201ENST00000519384 309 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC019322.1-201ENST00000571869 389 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC105224.1-201ENST00000587055 421 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 CR382285.1-202ENST00000604687 547 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC015982.1-201ENST00000608113 465 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 5S_rRNA.23-201ENST00000612086 102 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 OR1N1-202ENST00000619659 939 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC111152.1-202ENST00000635848 339 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 AC007485.2-201ENST00000623493 1667 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 CA10-204ENST00000570565 2276 ntTSL 5 BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 PWAR1-201ENST00000624188 2414 ntBASIC7.25□□□□□ -1.25
LIMD1Q9UGP4 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC092111.1-201ENST00000618256 3358 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 YES1-203ENST00000577961 4554 ntTSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms