Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 MIR585-201ENST00000384887 94 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 RNU2-65P-201ENST00000410162 185 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AL590762.4-201ENST00000425885 253 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 RPL7P29-201ENST00000437151 728 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 EIF2S2P5-201ENST00000457635 968 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC090114.3-201ENST00000479267 829 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 RN7SL244P-201ENST00000493405 297 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC010350.1-201ENST00000504908 231 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC008562.1-201ENST00000521763 330 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 CENPUP2-201ENST00000555897 1186 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 SLC25A36P1-201ENST00000590111 465 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AL713922.2-201ENST00000619384 716 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC019206.1-201ENST00000621938 425 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AC095050.2-201ENST00000510748 1458 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 HSPA8P19-201ENST00000505359 1517 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 AC017104.4-201ENST00000636283 1592 ntBASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 DDX6P1-205ENST00000441966 1436 ntBASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.7
ZNF540Q8NDQ6 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 RNA5SP28-201ENST00000363841 119 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 RNA5SP455-201ENST00000365190 119 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 MIR153-1-201ENST00000384914 90 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AL021331.1-201ENST00000402817 582 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 OR2AM1P-201ENST00000422137 422 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 GTF2IP2-201ENST00000424290 697 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 RBMY2QP-201ENST00000429799 1147 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 FTH1P16-201ENST00000435241 552 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AL354714.3-201ENST00000447284 493 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 MTCO1P31-201ENST00000506355 492 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 FTH1P9-201ENST00000513251 355 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 BRD9P1-201ENST00000529855 560 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 GLRXP2-201ENST00000555594 321 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AC027455.1-201ENST00000574104 594 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 SNORA74C-1-201ENST00000580726 201 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 ADAD1P2-201ENST00000588476 646 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AC005520.3-201ENST00000602874 370 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AL139286.1-201ENST00000604465 483 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AC093799.2-201ENST00000610062 578 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 CR589904.2-201ENST00000612533 440 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AC026368.1-201ENST00000614934 690 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 AL645927.2-201ENST00000618350 349 ntBASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.4□□□□□ -1.71
ZNF540Q8NDQ6 HSPD1P14-201ENST00000432666 1618 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms