Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
CCDC58Q4VC31 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC58Q4VC31 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC58Q4VC31 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.84□□□□□ -1.8
CCDC58Q4VC31 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 RNU6-328P-201ENST00000390887 106 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 MTCO1P54-201ENST00000430139 712 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC009263.1-201ENST00000441193 1239 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 HMGN2P7-201ENST00000456186 273 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AL136097.1-201ENST00000456945 913 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 RPL7P47-201ENST00000497299 556 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 IGKV1-32-201ENST00000519290 311 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC005000.1-201ENST00000536192 288 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 AC079587.1-201ENST00000603846 277 ntBASIC3.83□□□□□ -1.8
CCDC58Q4VC31 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC58Q4VC31 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AL590240.1-201ENST00000334118 313 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 RNA5SP397-201ENST00000391323 118 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC002069.1-201ENST00000429649 1159 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 RPL23AP89-201ENST00000439324 255 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AL356535.1-201ENST00000440335 398 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 RAD23BP3-201ENST00000454157 1152 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 RPL9P32-201ENST00000464118 620 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC011005.3-201ENST00000491624 395 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 BNIP3P41-201ENST00000503774 571 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC093763.2-201ENST00000505334 1223 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC025554.1-201ENST00000505641 188 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 ATP1B1P1-201ENST00000509767 915 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC008802.1-201ENST00000519121 791 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 HMGN2P6-201ENST00000551091 273 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC020978.9-201ENST00000624380 1141 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 FP325313.1-201ENST00000638228 703 ntBASIC3.82□□□□□ -1.8
CCDC58Q4VC31 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC58Q4VC31 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AC010928.1-201ENST00000592477 1447 ntBASIC3.81□□□□□ -1.8
CCDC58Q4VC31 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AL162591.2-201ENST00000449634 317 ntBASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 IGKV2-23-201ENST00000518729 323 ntBASIC3.81□□□□□ -1.8
CCDC58Q4VC31 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AC006064.5-201ENST00000541782 248 ntBASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AC021483.2-201ENST00000567415 758 ntBASIC3.81□□□□□ -1.8
CCDC58Q4VC31 MIR4489-201ENST00000578869 62 ntBASIC3.81□□□□□ -1.8
CCDC58Q4VC31 MIR4737-201ENST00000583979 81 ntBASIC3.81□□□□□ -1.8
CCDC58Q4VC31 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms