Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AC007834.2-201ENST00000536310 343 ntBASIC5.32□□□□□ -1.56
COPB1P53618 OSBPL9P5-201ENST00000542581 171 ntBASIC5.32□□□□□ -1.56
COPB1P53618 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.32□□□□□ -1.56
COPB1P53618 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.32□□□□□ -1.56
COPB1P53618 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COPB1P53618 AL049839.1-201ENST00000556151 657 ntBASIC5.32□□□□□ -1.56
COPB1P53618 AC011447.4-201ENST00000587562 111 ntBASIC5.32□□□□□ -1.56
COPB1P53618 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.32□□□□□ -1.56
COPB1P53618 VN1R78P-201ENST00000597393 564 ntBASIC5.32□□□□□ -1.56
COPB1P53618 AP002906.1-201ENST00000603405 233 ntBASIC5.32□□□□□ -1.56
COPB1P53618 RNU6-84P-201ENST00000607737 102 ntBASIC5.32□□□□□ -1.56
COPB1P53618 AL121895.2-201ENST00000619558 447 ntBASIC5.32□□□□□ -1.56
COPB1P53618 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COPB1P53618 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.32□□□□□ -1.56
COPB1P53618 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.32□□□□□ -1.56
COPB1P53618 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.32□□□□□ -1.56
COPB1P53618 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COPB1P53618 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COPB1P53618 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
COPB1P53618 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.31□□□□□ -1.56
COPB1P53618 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COPB1P53618 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.31□□□□□ -1.56
COPB1P53618 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 RNA5SP443-201ENST00000363083 132 ntBASIC5.31□□□□□ -1.56
COPB1P53618 RNA5SP428-201ENST00000365129 132 ntBASIC5.31□□□□□ -1.56
COPB1P53618 RNA5SP455-201ENST00000365190 119 ntBASIC5.31□□□□□ -1.56
COPB1P53618 CD2-201ENST00000369477 478 ntTSL 2 BASIC5.31□□□□□ -1.56
COPB1P53618 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 RNA5SP105-201ENST00000391123 113 ntBASIC5.31□□□□□ -1.56
COPB1P53618 U3.36-201ENST00000408418 213 ntBASIC5.31□□□□□ -1.56
COPB1P53618 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.31□□□□□ -1.56
COPB1P53618 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COPB1P53618 RNA5SP296-201ENST00000410523 111 ntBASIC5.31□□□□□ -1.56
COPB1P53618 RPL23AP27-201ENST00000415161 451 ntBASIC5.31□□□□□ -1.56
COPB1P53618 MTND4P3-201ENST00000417829 541 ntBASIC5.31□□□□□ -1.56
COPB1P53618 FABP7P1-201ENST00000424004 391 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC093084.1-201ENST00000424233 687 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC5.31□□□□□ -1.56
COPB1P53618 HIGD1AP4-201ENST00000430194 280 ntBASIC5.31□□□□□ -1.56
COPB1P53618 ETF1P3-201ENST00000430422 1160 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AL035458.1-201ENST00000433096 585 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC5.31□□□□□ -1.56
COPB1P53618 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.31□□□□□ -1.56
COPB1P53618 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.31□□□□□ -1.56
COPB1P53618 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 OR6K5P-201ENST00000447050 945 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.31□□□□□ -1.56
COPB1P53618 AC004815.1-201ENST00000484185 331 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.31□□□□□ -1.56
COPB1P53618 AC072052.1-201ENST00000496556 306 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.31□□□□□ -1.56
COPB1P53618 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.31□□□□□ -1.56
COPB1P53618 RNA5SP464-201ENST00000516251 108 ntBASIC5.31□□□□□ -1.56
COPB1P53618 MTCO2P15-201ENST00000532655 656 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.31□□□□□ -1.56
COPB1P53618 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.31□□□□□ -1.56
COPB1P53618 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.31□□□□□ -1.56
COPB1P53618 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5.31□□□□□ -1.56
COPB1P53618 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.31□□□□□ -1.56
COPB1P53618 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC5.31□□□□□ -1.56
COPB1P53618 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.31□□□□□ -1.56
COPB1P53618 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC5.31□□□□□ -1.56
COPB1P53618 AC116651.1-201ENST00000609724 556 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC092106.3-201ENST00000611308 722 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC100847.1-201ENST00000611316 481 ntBASIC5.31□□□□□ -1.56
COPB1P53618 AC091304.6-201ENST00000619761 202 ntBASIC5.31□□□□□ -1.56
COPB1P53618 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.31□□□□□ -1.56
COPB1P53618 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 AC139713.2-210ENST00000641741 992 ntBASIC5.31□□□□□ -1.56
COPB1P53618 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.31□□□□□ -1.56
COPB1P53618 SAMMSON-213ENST00000641336 1521 ntBASIC5.31□□□□□ -1.56
COPB1P53618 DDX18P6-201ENST00000450119 1997 ntBASIC5.31□□□□□ -1.56
COPB1P53618 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 AL672167.1-203ENST00000641299 2975 ntBASIC5.31□□□□□ -1.56
COPB1P53618 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COPB1P53618 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.3□□□□□ -1.56
COPB1P53618 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.3□□□□□ -1.56
COPB1P53618 AL445487.1-201ENST00000415694 1580 ntBASIC5.3□□□□□ -1.56
COPB1P53618 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.3□□□□□ -1.56
COPB1P53618 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 THAP12P4-201ENST00000528321 2266 ntBASIC5.3□□□□□ -1.56
COPB1P53618 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COPB1P53618 AL672167.2-201ENST00000377164 879 ntBASIC5.3□□□□□ -1.56
COPB1P53618 CASP3-203ENST00000393588 677 ntTSL 4 BASIC5.3□□□□□ -1.56
COPB1P53618 MCTS2P-201ENST00000394552 546 ntBASIC5.3□□□□□ -1.56
COPB1P53618 AL645927.1-201ENST00000396783 406 ntBASIC5.3□□□□□ -1.56
COPB1P53618 ARL4AP5-201ENST00000404372 599 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms