Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC008759.3-201ENST00000613300 508 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC009269.6-201ENST00000621778 588 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AP000346.3-201ENST00000622821 210 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC004232.3-201ENST00000622977 525 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC119674.1-212ENST00000641155 993 ntBASIC4.34□□□□□ -1.71
SOX3P41225 MFSD8-216ENST00000641147 4009 ntBASIC4.34□□□□□ -1.71
SOX3P41225 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SOX3P41225 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 AL445487.1-201ENST00000415694 1580 ntBASIC4.34□□□□□ -1.71
SOX3P41225 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SOX3P41225 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
SOX3P41225 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SOX3P41225 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
SOX3P41225 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SOX3P41225 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
SOX3P41225 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.34□□□□□ -1.72
SOX3P41225 MAPK10-303ENST00000641324 3959 ntBASIC4.33□□□□□ -1.72
SOX3P41225 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.33□□□□□ -1.72
SOX3P41225 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.33□□□□□ -1.72
SOX3P41225 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 RNU4-44P-201ENST00000363050 141 ntBASIC4.33□□□□□ -1.72
SOX3P41225 RNU1-20P-201ENST00000363314 162 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AL590762.2-201ENST00000395798 571 ntBASIC4.33□□□□□ -1.72
SOX3P41225 VDAC2P1-201ENST00000399358 958 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AL049697.2-201ENST00000403708 294 ntBASIC4.33□□□□□ -1.72
SOX3P41225 RPS4XP9-201ENST00000405151 780 ntBASIC4.33□□□□□ -1.72
SOX3P41225 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 RN7SKP267-201ENST00000410381 285 ntBASIC4.33□□□□□ -1.72
SOX3P41225 RNA5SP146-201ENST00000410743 123 ntBASIC4.33□□□□□ -1.72
SOX3P41225 Y_RNA.625-201ENST00000411256 107 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 AC140479.3-201ENST00000418944 1126 ntBASIC4.33□□□□□ -1.72
SOX3P41225 VN1R37P-201ENST00000419096 748 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC004448.2-201ENST00000422360 586 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC245028.1-201ENST00000423259 256 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 PPIAP13-201ENST00000434706 478 ntBASIC4.33□□□□□ -1.72
SOX3P41225 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 H2AFZP5-201ENST00000446960 382 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX3P41225 AC021205.1-201ENST00000468797 348 ntBASIC4.33□□□□□ -1.72
SOX3P41225 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX3P41225 AC093890.1-201ENST00000502554 540 ntBASIC4.33□□□□□ -1.72
SOX3P41225 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX3P41225 RNU5A-7P-201ENST00000515979 116 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC134698.5-201ENST00000519444 336 ntBASIC4.33□□□□□ -1.72
SOX3P41225 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.33□□□□□ -1.72
SOX3P41225 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX3P41225 GLRXP2-201ENST00000555594 321 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC105129.1-201ENST00000560250 297 ntBASIC4.33□□□□□ -1.72
SOX3P41225 ATP5J2P6-201ENST00000565203 266 ntBASIC4.33□□□□□ -1.72
SOX3P41225 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.33□□□□□ -1.72
SOX3P41225 AC106734.1-201ENST00000568646 663 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX3P41225 AC126365.2-201ENST00000580630 379 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC073091.2-201ENST00000603205 907 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AC091979.2-201ENST00000607514 214 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AF129408.1-201ENST00000608767 431 ntBASIC4.33□□□□□ -1.72
SOX3P41225 AP005229.2-201ENST00000609980 697 ntBASIC4.33□□□□□ -1.72
SOX3P41225 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX3P41225 AC093875.1-201ENST00000623688 504 ntBASIC4.33□□□□□ -1.72
SOX3P41225 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX3P41225 CASC19-204ENST00000641001 2055 ntBASIC4.33□□□□□ -1.72
SOX3P41225 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX3P41225 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 AC017104.4-201ENST00000636283 1592 ntBASIC4.32□□□□□ -1.72
SOX3P41225 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
SOX3P41225 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX3P41225 RNU4-31P-201ENST00000384211 141 ntBASIC4.32□□□□□ -1.72
SOX3P41225 RNU6-532P-201ENST00000384318 107 ntBASIC4.32□□□□□ -1.72
SOX3P41225 RNA5SP372-201ENST00000390836 115 ntBASIC4.32□□□□□ -1.72
SOX3P41225 RNU6-244P-201ENST00000391028 104 ntBASIC4.32□□□□□ -1.72
SOX3P41225 RNA5SP332-201ENST00000391063 115 ntBASIC4.32□□□□□ -1.72
SOX3P41225 ARL4AP5-201ENST00000404372 599 ntBASIC4.32□□□□□ -1.72
SOX3P41225 OR51B3P-201ENST00000412287 913 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms