Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 PCBP2P1-201ENST00000437262 977 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 RPS26P30-201ENST00000443431 335 ntBASIC5.36□□□□□ -1.55
MSX2P35548 WASF1P1-201ENST00000447560 1131 ntBASIC5.36□□□□□ -1.55
MSX2P35548 OR6C5P-201ENST00000452388 923 ntBASIC5.36□□□□□ -1.55
MSX2P35548 SSXP1-201ENST00000453640 473 ntBASIC5.36□□□□□ -1.55
MSX2P35548 RANP1-206ENST00000455094 651 ntBASIC5.36□□□□□ -1.55
MSX2P35548 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 AC004924.1-201ENST00000480160 781 ntBASIC5.36□□□□□ -1.55
MSX2P35548 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 AC073610.1-201ENST00000489971 396 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.36□□□□□ -1.55
MSX2P35548 AC090071.1-201ENST00000507713 644 ntBASIC5.36□□□□□ -1.55
MSX2P35548 ATP1B1P1-201ENST00000509767 915 ntBASIC5.36□□□□□ -1.55
MSX2P35548 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX2P35548 AC109471.1-201ENST00000511631 612 ntBASIC5.36□□□□□ -1.55
MSX2P35548 SNORA70.11-201ENST00000515987 138 ntBASIC5.36□□□□□ -1.55
MSX2P35548 SNORA70.13-201ENST00000516116 138 ntBASIC5.36□□□□□ -1.55
MSX2P35548 RN7SKP244-201ENST00000516513 307 ntBASIC5.36□□□□□ -1.55
MSX2P35548 RNA5SP230-201ENST00000517039 122 ntBASIC5.36□□□□□ -1.55
MSX2P35548 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.36□□□□□ -1.55
MSX2P35548 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 AC092709.1-201ENST00000521355 1045 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AP003033.2-201ENST00000528901 805 ntBASIC5.36□□□□□ -1.55
MSX2P35548 OR4C2P-201ENST00000530855 1064 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.36□□□□□ -1.55
MSX2P35548 OR11J2P-201ENST00000555298 907 ntBASIC5.36□□□□□ -1.55
MSX2P35548 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 AC008507.3-201ENST00000585753 472 ntBASIC5.36□□□□□ -1.55
MSX2P35548 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.36□□□□□ -1.55
MSX2P35548 BNIP3P4-201ENST00000604946 565 ntBASIC5.36□□□□□ -1.55
MSX2P35548 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX2P35548 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 AC012360.2-201ENST00000609349 391 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AL139099.4-201ENST00000614802 114 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 AC007342.8-201ENST00000623278 678 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AC093648.1-201ENST00000623546 606 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AC025048.6-202ENST00000627667 438 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AC109315.1-201ENST00000584143 1347 ntBASIC5.36□□□□□ -1.55
MSX2P35548 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX2P35548 AC027088.4-201ENST00000611559 1947 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
MSX2P35548 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 AL078621.3-201ENST00000623707 2042 ntBASIC5.35□□□□□ -1.55
MSX2P35548 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC092376.2-201ENST00000622621 4116 ntBASIC5.35□□□□□ -1.55
MSX2P35548 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
MSX2P35548 RNU6-797P-201ENST00000363101 109 ntBASIC5.35□□□□□ -1.55
MSX2P35548 RN7SKP187-201ENST00000365536 330 ntBASIC5.35□□□□□ -1.55
MSX2P35548 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 RNU6-532P-201ENST00000384318 107 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AP000357.1-201ENST00000409926 1165 ntBASIC5.35□□□□□ -1.55
MSX2P35548 PIGPP2-201ENST00000411569 458 ntBASIC5.35□□□□□ -1.55
MSX2P35548 ATG4AP1-201ENST00000416893 538 ntBASIC5.35□□□□□ -1.55
MSX2P35548 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 RPL7AP51-201ENST00000422016 760 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 ISCA1P1-201ENST00000426679 387 ntBASIC5.35□□□□□ -1.55
MSX2P35548 MTCO1P54-201ENST00000430139 712 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC022022.1-201ENST00000430304 178 ntBASIC5.35□□□□□ -1.55
MSX2P35548 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 CYCSP11-201ENST00000436426 315 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AL353662.1-201ENST00000439099 327 ntBASIC5.35□□□□□ -1.55
MSX2P35548 DNAJC19P4-201ENST00000440115 345 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC073465.2-201ENST00000440938 498 ntBASIC5.35□□□□□ -1.55
MSX2P35548 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 UBE2V1P7-201ENST00000446395 340 ntBASIC5.35□□□□□ -1.55
MSX2P35548 EEF1E1P1-201ENST00000446998 430 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AL445991.1-201ENST00000450381 475 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 PPIAP7-201ENST00000454070 489 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC093166.4-201ENST00000457867 318 ntBASIC5.35□□□□□ -1.55
MSX2P35548 RN7SL393P-201ENST00000463588 296 ntBASIC5.35□□□□□ -1.55
MSX2P35548 GAPDHP39-201ENST00000481866 979 ntBASIC5.35□□□□□ -1.55
MSX2P35548 RPL29P23-201ENST00000486188 442 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 PRDX4P1-201ENST00000507189 574 ntBASIC5.35□□□□□ -1.55
MSX2P35548 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms