Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.03□□□□□ -1.6
COL5A3P25940 AC107993.1-201ENST00000591343 684 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 RNU1-30P-201ENST00000606575 163 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A3P25940 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A3P25940 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
COL5A3P25940 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.03□□□□□ -1.6
COL5A3P25940 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 MIR483-201ENST00000385070 76 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.03□□□□□ -1.6
COL5A3P25940 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A3P25940 AC006517.1-201ENST00000480485 328 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 OR5M7P-201ENST00000526140 972 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 AL121834.1-201ENST00000572284 509 ntBASIC5.03□□□□□ -1.6
COL5A3P25940 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A3P25940 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A3P25940 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.03□□□□□ -1.6
COL5A3P25940 AC010266.2-201ENST00000564741 3255 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 AC074029.4-201ENST00000624796 1859 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 RNA5SP51-201ENST00000364750 119 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 MIR491-201ENST00000384877 84 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 AC007068.1-201ENST00000396690 844 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 PEX12P1-201ENST00000400284 1048 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 NPM1P37-201ENST00000403105 874 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 AC091390.3-201ENST00000426478 338 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.02□□□□□ -1.61
COL5A3P25940 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.02□□□□□ -1.61
COL5A3P25940 AC115115.1-201ENST00000449927 248 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 PPIAP3-201ENST00000450588 505 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.02□□□□□ -1.61
COL5A3P25940 MIR3200-201ENST00000580767 85 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.02□□□□□ -1.61
COL5A3P25940 AC090246.1-201ENST00000616499 426 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.02□□□□□ -1.61
COL5A3P25940 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 AC032011.1-201ENST00000611703 1549 ntBASIC5.02□□□□□ -1.61
COL5A3P25940 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A3P25940 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
COL5A3P25940 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC5.01□□□□□ -1.61
COL5A3P25940 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
COL5A3P25940 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC5.01□□□□□ -1.61
COL5A3P25940 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.01□□□□□ -1.61
COL5A3P25940 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.01□□□□□ -1.61
COL5A3P25940 AL031584.1-201ENST00000447169 754 ntBASIC5.01□□□□□ -1.61
COL5A3P25940 RPS3AP46-201ENST00000448352 682 ntBASIC5.01□□□□□ -1.61
COL5A3P25940 snoU13.24-201ENST00000458998 104 ntBASIC5.01□□□□□ -1.61
COL5A3P25940 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.01□□□□□ -1.61
COL5A3P25940 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.01□□□□□ -1.61
COL5A3P25940 AC100770.1-201ENST00000532310 322 ntBASIC5.01□□□□□ -1.61
COL5A3P25940 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.01□□□□□ -1.61
COL5A3P25940 AL451044.1-201ENST00000604867 238 ntBASIC5.01□□□□□ -1.61
COL5A3P25940 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.01□□□□□ -1.61
COL5A3P25940 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.01□□□□□ -1.61
COL5A3P25940 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
COL5A3P25940 AP004289.2-201ENST00000444413 1457 ntBASIC5.01□□□□□ -1.61
COL5A3P25940 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 AC003985.2-201ENST00000562268 1669 ntBASIC5.01□□□□□ -1.61
COL5A3P25940 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.01□□□□□ -1.61
COL5A3P25940 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.01□□□□□ -1.61
COL5A3P25940 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL5A3P25940 PGBD4P8-201ENST00000412993 562 ntBASIC5□□□□□ -1.61
COL5A3P25940 AC092647.1-201ENST00000420654 287 ntBASIC5□□□□□ -1.61
COL5A3P25940 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5□□□□□ -1.61
COL5A3P25940 AC012417.1-201ENST00000582307 1039 ntBASIC5□□□□□ -1.61
COL5A3P25940 MIR5187-201ENST00000583479 76 ntBASIC5□□□□□ -1.61
COL5A3P25940 AL159169.3-201ENST00000608871 561 ntBASIC5□□□□□ -1.61
COL5A3P25940 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5□□□□□ -1.61
COL5A3P25940 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A3P25940 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A3P25940 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5□□□□□ -1.61
COL5A3P25940 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
COL5A3P25940 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A3P25940 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A3P25940 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5□□□□□ -1.61
COL5A3P25940 Z74696.2-201ENST00000436514 498 ntBASIC5□□□□□ -1.61
COL5A3P25940 PRDX3P3-201ENST00000447765 522 ntBASIC5□□□□□ -1.61
COL5A3P25940 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5□□□□□ -1.61
COL5A3P25940 AL133162.1-201ENST00000463228 453 ntBASIC5□□□□□ -1.61
COL5A3P25940 PLGLA-201ENST00000465668 449 ntBASIC5□□□□□ -1.61
COL5A3P25940 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5□□□□□ -1.61
COL5A3P25940 OR8I1P-201ENST00000529291 931 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms