Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL139039.2-201ENST00000407436 479 ntBASIC3.86□□□□□ -1.79
USF1P22415 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.86□□□□□ -1.79
USF1P22415 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 CBX1P1-201ENST00000440184 427 ntBASIC3.86□□□□□ -1.79
USF1P22415 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC3.86□□□□□ -1.79
USF1P22415 NUTF2P7-201ENST00000453086 375 ntBASIC3.86□□□□□ -1.79
USF1P22415 EIF2S2P5-201ENST00000457635 968 ntBASIC3.86□□□□□ -1.79
USF1P22415 EIF2S2P4-201ENST00000461070 984 ntBASIC3.86□□□□□ -1.79
USF1P22415 RPL7AP28-201ENST00000464513 571 ntBASIC3.86□□□□□ -1.79
USF1P22415 RN7SL303P-201ENST00000469773 251 ntBASIC3.86□□□□□ -1.79
USF1P22415 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 AC007537.2-201ENST00000472093 511 ntBASIC3.86□□□□□ -1.79
USF1P22415 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 AC098799.3-201ENST00000506095 438 ntBASIC3.86□□□□□ -1.79
USF1P22415 AC025674.1-201ENST00000507074 324 ntBASIC3.86□□□□□ -1.79
USF1P22415 IGLVIV-65-201ENST00000517313 360 ntBASIC3.86□□□□□ -1.79
USF1P22415 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 AL109766.1-201ENST00000555080 552 ntBASIC3.86□□□□□ -1.79
USF1P22415 AC068831.4-201ENST00000556118 109 ntBASIC3.86□□□□□ -1.79
USF1P22415 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.86□□□□□ -1.79
USF1P22415 RN7SL176P-201ENST00000580352 264 ntBASIC3.86□□□□□ -1.79
USF1P22415 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC3.86□□□□□ -1.79
USF1P22415 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.86□□□□□ -1.79
USF1P22415 AC115286.1-201ENST00000604298 434 ntBASIC3.86□□□□□ -1.79
USF1P22415 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.86□□□□□ -1.79
USF1P22415 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.86□□□□□ -1.79
USF1P22415 AC116447.1-201ENST00000613153 453 ntBASIC3.86□□□□□ -1.79
USF1P22415 AC079298.2-201ENST00000623885 459 ntBASIC3.86□□□□□ -1.79
USF1P22415 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.86□□□□□ -1.79
USF1P22415 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC3.86□□□□□ -1.79
USF1P22415 AL451142.2-201ENST00000429076 2090 ntBASIC3.86□□□□□ -1.79
USF1P22415 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
USF1P22415 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
USF1P22415 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 PHKBP1-201ENST00000450951 1951 ntBASIC3.85□□□□□ -1.79
USF1P22415 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
USF1P22415 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
USF1P22415 CCT8P1-201ENST00000413611 1657 ntBASIC3.85□□□□□ -1.79
USF1P22415 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 IL6STP1-201ENST00000346911 1020 ntBASIC3.85□□□□□ -1.79
USF1P22415 MIR708-201ENST00000390708 88 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC240504.1-201ENST00000395709 845 ntBASIC3.85□□□□□ -1.79
USF1P22415 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 AL603766.1-201ENST00000407763 664 ntBASIC3.85□□□□□ -1.79
USF1P22415 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 RN7SKP222-201ENST00000410651 315 ntBASIC3.85□□□□□ -1.79
USF1P22415 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 BTF3P9-201ENST00000418784 283 ntBASIC3.85□□□□□ -1.79
USF1P22415 RPL7AP25-201ENST00000423357 805 ntBASIC3.85□□□□□ -1.79
USF1P22415 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.85□□□□□ -1.79
USF1P22415 YWHAZP2-201ENST00000440317 728 ntBASIC3.85□□□□□ -1.79
USF1P22415 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC3.85□□□□□ -1.79
USF1P22415 AC108463.1-201ENST00000450258 347 ntBASIC3.85□□□□□ -1.79
USF1P22415 EIF4A1P11-201ENST00000451239 222 ntBASIC3.85□□□□□ -1.79
USF1P22415 AL121877.1-201ENST00000453704 622 ntBASIC3.85□□□□□ -1.79
USF1P22415 RPL21P126-201ENST00000470049 478 ntBASIC3.85□□□□□ -1.79
USF1P22415 RN7SL810P-201ENST00000493031 276 ntBASIC3.85□□□□□ -1.79
USF1P22415 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC091917.2-201ENST00000505002 744 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC021146.3-201ENST00000511911 260 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC108471.1-201ENST00000513977 287 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC068714.1-201ENST00000559623 800 ntBASIC3.85□□□□□ -1.79
USF1P22415 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC3.85□□□□□ -1.79
USF1P22415 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.85□□□□□ -1.79
USF1P22415 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 AC068020.1-201ENST00000594215 661 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC130352.1-201ENST00000602979 661 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC005021.1-201ENST00000608730 355 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC234782.5-201ENST00000617723 324 ntBASIC3.85□□□□□ -1.79
USF1P22415 AC015804.1-201ENST00000622935 435 ntBASIC3.85□□□□□ -1.79
USF1P22415 RPL23AP61-201ENST00000623642 466 ntBASIC3.85□□□□□ -1.79
USF1P22415 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC3.85□□□□□ -1.79
USF1P22415 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC3.85□□□□□ -1.79
USF1P22415 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC3.85□□□□□ -1.79
USF1P22415 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.85□□□□□ -1.79
USF1P22415 AC125257.1-201ENST00000560400 2930 ntBASIC3.85□□□□□ -1.79
USF1P22415 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USF1P22415 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.84□□□□□ -1.79
USF1P22415 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
USF1P22415 ASNSP1-201ENST00000518311 1939 ntBASIC3.84□□□□□ -1.79
USF1P22415 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.79
USF1P22415 RNU1-83P-201ENST00000363426 164 ntBASIC3.84□□□□□ -1.79
USF1P22415 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC3.84□□□□□ -1.79
USF1P22415 HSPD1P16-201ENST00000402302 394 ntBASIC3.84□□□□□ -1.79
USF1P22415 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
USF1P22415 AL080315.1-201ENST00000406055 466 ntBASIC3.84□□□□□ -1.79
USF1P22415 RPL23AP48-201ENST00000406913 488 ntBASIC3.84□□□□□ -1.79
USF1P22415 RNU6-564P-201ENST00000410983 104 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms