Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HMGA1P17096 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HMGA1P17096 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HMGA1P17096 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
HMGA1P17096 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HMGA1P17096 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.2□□□□□ -1.74
HMGA1P17096 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.2□□□□□ -1.74
HMGA1P17096 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HMGA1P17096 SNORD35B-201ENST00000363660 87 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 MIR554-201ENST00000384874 96 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 RN7SKP199-201ENST00000410325 305 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.2□□□□□ -1.74
HMGA1P17096 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 GAPDHP36-201ENST00000480688 918 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HMGA1P17096 AC021146.3-201ENST00000511911 260 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 NDUFA5P2-201ENST00000519723 344 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HMGA1P17096 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.2□□□□□ -1.74
HMGA1P17096 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.2□□□□□ -1.74
HMGA1P17096 AC005255.1-201ENST00000593748 216 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 MIR432-201ENST00000606207 94 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 AC090912.3-201ENST00000609775 533 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 AC245389.2-201ENST00000616023 576 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 AC006133.1-201ENST00000617106 264 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HMGA1P17096 AC242843.1-201ENST00000618702 573 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HMGA1P17096 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.2□□□□□ -1.74
HMGA1P17096 CYP1D1P-201ENST00000416662 1433 ntBASIC4.2□□□□□ -1.74
HMGA1P17096 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
HMGA1P17096 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HMGA1P17096 AC017104.4-201ENST00000636283 1592 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HMGA1P17096 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
HMGA1P17096 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.19□□□□□ -1.74
HMGA1P17096 AL359837.1-201ENST00000381357 287 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 ATP5F1P3-201ENST00000397213 657 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 HDGFP1-201ENST00000405943 252 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 PDSS1P1-201ENST00000422953 1114 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HMGA1P17096 AL445584.1-201ENST00000431451 330 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 GEMIN8P3-201ENST00000445417 720 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 OR9M1P-201ENST00000459641 921 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 PPM1AP1-201ENST00000502740 1135 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.19□□□□□ -1.74
HMGA1P17096 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.19□□□□□ -1.74
HMGA1P17096 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.19□□□□□ -1.74
HMGA1P17096 AC079171.1-201ENST00000568788 914 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 MIR4429-201ENST00000580105 73 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.19□□□□□ -1.74
HMGA1P17096 AC107982.3-201ENST00000584957 985 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 OR7M1P-201ENST00000608946 533 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.19□□□□□ -1.74
HMGA1P17096 AC039056.2-201ENST00000622261 511 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HMGA1P17096 HCFC2P1-201ENST00000392864 1592 ntBASIC4.19□□□□□ -1.74
HMGA1P17096 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HMGA1P17096 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 RNA5SP399-201ENST00000364003 117 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 VDAC2P1-201ENST00000399358 958 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.18□□□□□ -1.74
HMGA1P17096 AL389915.1-201ENST00000422463 466 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HMGA1P17096 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.18□□□□□ -1.74
HMGA1P17096 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 AC007389.2-201ENST00000434630 306 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 SLC25A15P5-201ENST00000508033 253 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.18□□□□□ -1.74
HMGA1P17096 RNU6-352P-201ENST00000516908 107 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 RNA5SP179-201ENST00000517284 121 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.18□□□□□ -1.74
HMGA1P17096 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.18□□□□□ -1.74
HMGA1P17096 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.18□□□□□ -1.74
HMGA1P17096 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 AL451044.1-201ENST00000604867 238 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 AC091167.4-201ENST00000605079 184 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.18□□□□□ -1.74
HMGA1P17096 AL645927.2-201ENST00000618350 349 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 OR8B1P-202ENST00000641132 1178 ntBASIC4.18□□□□□ -1.74
HMGA1P17096 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HMGA1P17096 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.18□□□□□ -1.74
HMGA1P17096 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
HMGA1P17096 MARK2P15-201ENST00000432204 2186 ntBASIC4.17□□□□□ -1.74
HMGA1P17096 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HMGA1P17096 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms