Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 FDX1P2-201ENST00000450769 375 ntBASIC4.06□□□□□ -1.76
VCANP13611 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 AC111000.6-201ENST00000514471 709 ntBASIC4.06□□□□□ -1.76
VCANP13611 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.06□□□□□ -1.76
VCANP13611 AL157762.1-201ENST00000619612 415 ntBASIC4.06□□□□□ -1.76
VCANP13611 DMD-228ENST00000541735 7080 ntTSL 5 BASIC4.06□□□□□ -1.76
VCANP13611 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
VCANP13611 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 AC007738.1-201ENST00000413892 348 ntBASIC4.06□□□□□ -1.76
VCANP13611 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 Z75741.1-201ENST00000446793 314 ntBASIC4.06□□□□□ -1.76
VCANP13611 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.06□□□□□ -1.76
VCANP13611 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 AC138409.2-202ENST00000507274 458 ntBASIC4.06□□□□□ -1.76
VCANP13611 RNA5SP179-201ENST00000517284 121 ntBASIC4.06□□□□□ -1.76
VCANP13611 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.06□□□□□ -1.76
VCANP13611 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.06□□□□□ -1.76
VCANP13611 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 BTF3P5-201ENST00000457252 467 ntBASIC4.06□□□□□ -1.76
VCANP13611 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 RPL27AP5-201ENST00000469428 449 ntBASIC4.06□□□□□ -1.76
VCANP13611 RPL32P34-201ENST00000486380 400 ntBASIC4.06□□□□□ -1.76
VCANP13611 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.06□□□□□ -1.76
VCANP13611 AL391497.1-201ENST00000608671 547 ntBASIC4.06□□□□□ -1.76
VCANP13611 AC007998.5-201ENST00000622938 237 ntBASIC4.06□□□□□ -1.76
VCANP13611 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
VCANP13611 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 VPS35P1-201ENST00000563400 1518 ntBASIC4.06□□□□□ -1.76
VCANP13611 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VCANP13611 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
VCANP13611 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.05□□□□□ -1.76
VCANP13611 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 Y_RNA.466-201ENST00000384294 113 ntBASIC4.05□□□□□ -1.76
VCANP13611 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.05□□□□□ -1.76
VCANP13611 NPM1P18-201ENST00000434232 732 ntBASIC4.05□□□□□ -1.76
VCANP13611 AC010095.1-201ENST00000443543 144 ntBASIC4.05□□□□□ -1.76
VCANP13611 HMGN1P11-201ENST00000508668 303 ntBASIC4.05□□□□□ -1.76
VCANP13611 HIGD1AP3-201ENST00000515857 278 ntBASIC4.05□□□□□ -1.76
VCANP13611 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
VCANP13611 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 HSPA8P17-201ENST00000427029 1382 ntBASIC4.05□□□□□ -1.76
VCANP13611 VPS8-207ENST00000436792 5011 ntAPPRIS ALT1 TSL 2 BASIC4.05□□□□□ -1.76
VCANP13611 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.05□□□□□ -1.76
VCANP13611 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.05□□□□□ -1.76
VCANP13611 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 AL158071.1-201ENST00000430315 461 ntBASIC4.05□□□□□ -1.76
VCANP13611 AC073387.1-201ENST00000453261 709 ntBASIC4.05□□□□□ -1.76
VCANP13611 RPL7P22-201ENST00000466005 733 ntBASIC4.05□□□□□ -1.76
VCANP13611 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.05□□□□□ -1.76
VCANP13611 AC023141.12-201ENST00000512399 199 ntBASIC4.05□□□□□ -1.76
VCANP13611 PHBP14-201ENST00000512887 367 ntBASIC4.05□□□□□ -1.76
VCANP13611 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.05□□□□□ -1.76
VCANP13611 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.05□□□□□ -1.76
VCANP13611 AL451007.1-201ENST00000595491 289 ntBASIC4.05□□□□□ -1.76
VCANP13611 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.05□□□□□ -1.76
VCANP13611 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.05□□□□□ -1.76
VCANP13611 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
VCANP13611 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC4.05□□□□□ -1.76
VCANP13611 SNORA74C-2-201ENST00000411179 201 ntBASIC4.05□□□□□ -1.76
VCANP13611 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.05□□□□□ -1.76
VCANP13611 AL160290.3-201ENST00000604869 165 ntBASIC4.05□□□□□ -1.76
VCANP13611 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.05□□□□□ -1.76
VCANP13611 AL355365.1-201ENST00000616480 294 ntBASIC4.05□□□□□ -1.76
VCANP13611 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
VCANP13611 DMD-202ENST00000343523 5623 ntTSL 5 BASIC4.04□□□□□ -1.76
VCANP13611 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.04□□□□□ -1.76
VCANP13611 AL034370.1-201ENST00000397254 1590 ntBASIC4.04□□□□□ -1.76
VCANP13611 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VCANP13611 AC022417.1-201ENST00000624768 1303 ntBASIC4.04□□□□□ -1.76
VCANP13611 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VCANP13611 RNA5SP51-201ENST00000364750 119 ntBASIC4.04□□□□□ -1.76
VCANP13611 RNA5SP306-201ENST00000411087 107 ntBASIC4.04□□□□□ -1.76
VCANP13611 EIF1P3-201ENST00000423841 334 ntBASIC4.04□□□□□ -1.76
VCANP13611 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
VCANP13611 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.04□□□□□ -1.76
VCANP13611 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.04□□□□□ -1.76
VCANP13611 AL033543.1-201ENST00000623440 13454 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms