Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL356057.1-201ENST00000533798 831 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC087897.1-201ENST00000550134 156 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC063949.1-201ENST00000552900 865 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 MIR4789-201ENST00000577469 82 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 PIGPP4-201ENST00000584447 307 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC010620.1-201ENST00000601088 1102 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC009090.3-201ENST00000616553 565 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
LMX1BO60663 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
LMX1BO60663 RN7SKP149-201ENST00000363008 344 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 RN7SKP113-201ENST00000363891 295 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 RNU4-68P-201ENST00000364314 141 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 MCTS2P-201ENST00000394552 546 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 HMGB1P10-201ENST00000395823 563 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 SKINT1L-201ENST00000401057 817 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 FABP12P1-201ENST00000401911 322 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 RNU4-74P-201ENST00000411280 161 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC010385.1-201ENST00000412374 256 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.34□□□□□ -1.71
LMX1BO60663 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC023128.2-201ENST00000420880 1223 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 PRPF38AP2-201ENST00000438179 851 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 RPS29P33-201ENST00000456717 146 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC091544.1-201ENST00000484702 348 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC069304.1-201ENST00000491593 704 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC073073.1-201ENST00000493920 463 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 AP003717.3-201ENST00000544832 1180 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC023050.2-201ENST00000544968 387 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 BNIP3P1-201ENST00000547295 580 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.34□□□□□ -1.71
LMX1BO60663 AL049830.4-201ENST00000555149 351 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 MIR4697-201ENST00000582977 78 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC061975.8-201ENST00000587058 721 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 MTCO2P22-201ENST00000603246 681 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC012557.2-201ENST00000605919 418 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 uc_338.18-201ENST00000615451 175 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC123767.1-202ENST00000620407 817 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 AC015660.5-201ENST00000623238 564 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
LMX1BO60663 AC017007.4-201ENST00000503353 1352 ntBASIC4.34□□□□□ -1.71
LMX1BO60663 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LMX1BO60663 AL132640.2-201ENST00000559968 1698 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms