Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC103591.2-201ENST00000265259 766 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 TBCAP2-201ENST00000416175 326 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 RBMY2KP-201ENST00000418221 992 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AL031736.2-201ENST00000426573 787 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 DEFB130D-201ENST00000426866 237 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC008072.1-201ENST00000434254 824 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC092170.1-201ENST00000440211 356 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC234781.3-201ENST00000452540 973 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AL445433.1-201ENST00000457507 257 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 RPS17P2-201ENST00000461663 408 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 UBA52P3-201ENST00000491303 382 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS28Q9UK41 MTCO3P27-201ENST00000514397 196 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 RNA5SP464-201ENST00000516251 108 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 RN7SKP283-201ENST00000517197 270 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AP003355.1-201ENST00000518956 587 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS28Q9UK41 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC011611.5-201ENST00000552477 578 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AGGF1P9-201ENST00000561884 913 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC116553.2-201ENST00000564203 463 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC095057.3-201ENST00000567102 1157 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 TMF1P1-201ENST00000576058 373 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 RNF138P2-201ENST00000603490 592 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC104687.2-201ENST00000604442 342 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AL049737.1-201ENST00000413920 1403 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS28Q9UK41 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS28Q9UK41 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.02□□□□□ -1.61
VPS28Q9UK41 AC083899.2-201ENST00000423285 1376 ntBASIC5.02□□□□□ -1.61
VPS28Q9UK41 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 RNU6-1339P-201ENST00000363574 91 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 RNU6-468P-201ENST00000384003 109 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 RPL22P22-201ENST00000395439 379 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AL357515.1-201ENST00000402967 542 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 UQCRFS1P3-201ENST00000407697 385 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 RNU2-65P-201ENST00000410162 185 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 QRSL1P2-201ENST00000418582 964 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 OR5AW1P-201ENST00000426334 1006 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 GTF2IP12-201ENST00000456547 356 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 RPL23AP56-201ENST00000460778 453 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC090686.1-201ENST00000481577 749 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 RPS23P1-201ENST00000491662 432 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC105233.1-201ENST00000498840 781 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC073358.1-201ENST00000505671 684 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 SNORD116-26-201ENST00000516006 96 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 OR4A2P-201ENST00000527276 913 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC068339.2-201ENST00000534395 618 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 MIR3667-201ENST00000581025 74 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC093765.1-201ENST00000603758 881 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AL138960.2-201ENST00000625145 535 ntBASIC5.01□□□□□ -1.61
VPS28Q9UK41 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS28Q9UK41 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS28Q9UK41 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5□□□□□ -1.61
VPS28Q9UK41 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms