Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 MAPK10-303ENST00000641324 3959 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 CCT8P1-201ENST00000413611 1657 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 MTND4P21-201ENST00000453886 1357 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 BX005019.1-201ENST00000561881 1810 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AL583835.1-201ENST00000399570 407 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 VDAC1P9-201ENST00000412766 841 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 RPL21P108-201ENST00000413857 481 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 DPY19L1P2-201ENST00000426647 915 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 RPS29P17-201ENST00000430795 166 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC011998.1-201ENST00000433403 117 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC099063.2-201ENST00000446360 662 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 VN1R32P-201ENST00000452234 905 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AL354710.1-201ENST00000453641 246 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 RN7SL809P-201ENST00000482040 297 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC108022.1-201ENST00000493466 478 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 TRAV8-5-201ENST00000537369 341 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AL049870.4-201ENST00000555741 486 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 RPL23AP97-201ENST00000568955 471 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC040174.2-201ENST00000602701 465 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC096553.1-201ENST00000605169 829 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC015849.2-201ENST00000605738 409 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AL353726.1-201ENST00000614041 1000 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 AC092079.1-201ENST00000558620 1985 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 EIF2AP4-201ENST00000424793 1781 ntBASIC4.45□□□□□ -1.7
LHX3Q9UBR4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
LHX3Q9UBR4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RN7SKP74-201ENST00000362849 309 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RNU1-44P-201ENST00000384453 163 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC097374.1-203ENST00000400783 485 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RNA5SP296-201ENST00000410523 111 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 CHIAP3-201ENST00000423668 1133 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 MTCO3P21-201ENST00000430791 643 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC073143.1-201ENST00000436316 395 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RPL23AP52-201ENST00000439311 478 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RPL7P33-201ENST00000444159 742 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 CLIC4P1-201ENST00000453177 535 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RPL7P32-201ENST00000457119 744 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RNU7-27P-201ENST00000459281 62 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 RPL21P6-201ENST00000479171 504 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC093663.2-201ENST00000484625 313 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 ATP1B1P1-201ENST00000509767 915 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC087272.1-201ENST00000523624 533 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC008083.2-201ENST00000546707 476 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 CKS1BP1-201ENST00000555221 240 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC027176.2-201ENST00000559166 746 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 ATP5J2P6-201ENST00000565203 266 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC011472.4-201ENST00000615848 491 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 BNIP3P41-202ENST00000616656 861 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 uc_338.13-201ENST00000618243 179 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms