Protein–RNA interactions for Protein: Q8N9Z2

CCDC71L, Coiled-coil domain-containing protein 71L, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC71LQ8N9Z2 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC71LQ8N9Z2 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC71LQ8N9Z2 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC71LQ8N9Z2 CCT8P1-201ENST00000413611 1657 ntBASIC3.81□□□□□ -1.8
CCDC71LQ8N9Z2 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC71LQ8N9Z2 AC090229.1-201ENST00000590983 1609 ntBASIC3.81□□□□□ -1.8
CCDC71LQ8N9Z2 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 KARSP3-201ENST00000571212 1504 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 NCLP2-201ENST00000416078 1462 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 MIR323A-201ENST00000362199 86 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 RN7SKP160-201ENST00000363804 340 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AL353692.2-201ENST00000407054 335 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 RNA5SP104-201ENST00000410989 118 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 RNU2-72P-201ENST00000411175 163 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 NPM1P4-201ENST00000414095 812 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 RPL7P11-201ENST00000437586 658 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 SNRPGP5-201ENST00000456003 220 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 RNA5SP362-201ENST00000516048 118 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 RFPL1S-203ENST00000539579 330 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 MIR4512-201ENST00000583257 77 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC103792.1-201ENST00000603591 919 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AL450270.1-201ENST00000606160 391 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC008725.1-201ENST00000605123 2263 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AL391684.1-202ENST00000641293 1636 ntBASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC71LQ8N9Z2 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC010300.1-201ENST00000600671 5134 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC135352.1-201ENST00000506173 1418 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC011266.1-201ENST00000624119 3569 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 XIAPP3-201ENST00000312918 795 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 RNU1-15P-201ENST00000353977 144 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 RNA5SP513-201ENST00000364648 118 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 RNU1-63P-201ENST00000383902 164 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 CHMP1B2P-201ENST00000399581 597 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 RPS27AP11-201ENST00000402798 447 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 GJA6P-201ENST00000415117 1042 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AL645608.4-201ENST00000423619 154 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 ZNF965P-201ENST00000432501 817 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 RHOT1P3-201ENST00000436571 331 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 EIF4A2P4-201ENST00000458691 1196 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 IGLV2-34-201ENST00000490007 283 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 FTH1P9-201ENST00000513251 355 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 MTATP6P1-201ENST00000514057 681 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 IGLV3-26-201ENST00000520756 302 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 OR10G5P-201ENST00000532733 358 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC069240.1-201ENST00000548774 375 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 CYP4A43P-201ENST00000568156 121 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 SNORD95-201ENST00000579879 68 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC083899.3-201ENST00000603413 594 ntBASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC71LQ8N9Z2 AC015813.4-201ENST00000610469 179 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms