| ATG9A | Q7Z3C6 | SLIT2-IT1-201 | ENST00000515882 | 601 nt | TSL 1 (best) BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC007424.1-205 | ENST00000552615 | 579 nt | TSL 4 BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | SETP1-201 | ENST00000556014 | 845 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AP005262.1-201 | ENST00000582646 | 997 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC009303.2-201 | ENST00000585381 | 1083 nt | TSL 3 BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC011477.5-201 | ENST00000586571 | 259 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | CEACAM7-204 | ENST00000602225 | 524 nt | TSL 1 (best) BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AL133247.2-201 | ENST00000603236 | 482 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC005034.4-201 | ENST00000603612 | 899 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC144521.1-201 | ENST00000607148 | 956 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC091979.2-201 | ENST00000607514 | 214 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AP003499.2-201 | ENST00000624100 | 483 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | C1orf112-202 | ENST00000359326 | 4002 nt | APPRIS P3 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | SCN1A-201 | ENST00000303395 | 8533 nt | APPRIS ALT1 TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | TNRC6B-202 | ENST00000335727 | 17933 nt | TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | FOXP2-207 | ENST00000393494 | 2664 nt | APPRIS P2 TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | CNTN5-201 | ENST00000279463 | 5925 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | GABRG2-203 | ENST00000414552 | 3927 nt | TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | OR4C11-201 | ENST00000302231 | 1045 nt | APPRIS P1 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AL672167.2-201 | ENST00000377164 | 879 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AL359643.1-201 | ENST00000404109 | 423 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | SF3B1-202 | ENST00000409915 | 600 nt | TSL 2 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | RN7SKP235-201 | ENST00000410662 | 305 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | SETP15-201 | ENST00000412724 | 337 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | DAB1-AS1-201 | ENST00000416598 | 1262 nt | TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC066595.1-201 | ENST00000426697 | 399 nt | TSL 3 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC004975.1-201 | ENST00000428733 | 208 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | PPIAP13-201 | ENST00000434706 | 478 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AL121872.1-202 | ENST00000435867 | 308 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | MTND2P39-201 | ENST00000457230 | 764 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC005304.1-201 | ENST00000457609 | 405 nt | TSL 3 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | CREM-220 | ENST00000463314 | 964 nt | TSL 2 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | UQCRHP4-201 | ENST00000471686 | 272 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | RN7SL812P-201 | ENST00000493791 | 279 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | CFLAR-225 | ENST00000494258 | 693 nt | TSL 3 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | IGBP1P5-201 | ENST00000507524 | 1000 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC108475.1-201 | ENST00000507880 | 950 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AF117829.1-202 | ENST00000524166 | 836 nt | TSL 3 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AP001804.2-201 | ENST00000533932 | 910 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | LINC02290-201 | ENST00000554187 | 608 nt | TSL 4 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC027455.1-201 | ENST00000574104 | 594 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AL161729.3-201 | ENST00000603533 | 673 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC020910.2-201 | ENST00000603635 | 610 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AL512506.1-201 | ENST00000613918 | 449 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AC016717.3-201 | ENST00000624730 | 554 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | LINC01002-227 | ENST00000633363 | 541 nt | TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | ZNF208-207 | ENST00000609966 | 3653 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | EOGT-210 | ENST00000615922 | 1931 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | AP000756.2-201 | ENST00000624168 | 2567 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| ATG9A | Q7Z3C6 | HMBOX1-202 | ENST00000355231 | 1694 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | STON1-201 | ENST00000404752 | 5511 nt | APPRIS P1 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | MECOM-219 | ENST00000628990 | 4835 nt | APPRIS P3 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | MTRNR2L11-201 | ENST00000604646 | 1552 nt | APPRIS P1 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | DYTN-201 | ENST00000452335 | 2051 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | LINC01689-201 | ENST00000416218 | 2007 nt | TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | WDR72-204 | ENST00000559418 | 3602 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | CP-201 | ENST00000264613 | 4676 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | SMG1P4-204 | ENST00000523028 | 4131 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | A1CF-207 | ENST00000395495 | 9400 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | TRAV23DV6-201 | ENST00000390451 | 409 nt | APPRIS P1 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC099566.1-204 | ENST00000413825 | 943 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | LINC02542-201 | ENST00000418567 | 822 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AL606490.7-201 | ENST00000433136 | 191 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AL138787.1-202 | ENST00000437804 | 898 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | NPM1P39-201 | ENST00000449818 | 867 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | NREP-207 | ENST00000450761 | 636 nt | APPRIS P1 TSL 4 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC009963.2-201 | ENST00000453431 | 138 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AP002345.1-201 | ENST00000456493 | 928 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | CMAHP-205 | ENST00000471416 | 1118 nt | TSL 2 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC068587.1-201 | ENST00000483613 | 781 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC124242.1-202 | ENST00000499554 | 1052 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | NADK2-AS1-201 | ENST00000501794 | 720 nt | TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC008591.1-201 | ENST00000503616 | 631 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | RN7SKP21-201 | ENST00000516503 | 220 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | RNU6-889P-201 | ENST00000517189 | 103 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | IGKV2D-10-201 | ENST00000520194 | 281 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC090151.1-201 | ENST00000520784 | 730 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | DDHD2-219 | ENST00000529845 | 945 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | DERA-209 | ENST00000532964 | 854 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | C11orf74-210 | ENST00000534635 | 801 nt | APPRIS ALT2 TSL 2 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC005906.2-204 | ENST00000541095 | 481 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC027176.2-201 | ENST00000559166 | 746 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | MIR4472-2-201 | ENST00000582069 | 67 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | SS18L2P2-201 | ENST00000583960 | 235 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | MIR3936-201 | ENST00000584304 | 110 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC006504.2-201 | ENST00000589471 | 458 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC025175.1-201 | ENST00000606482 | 759 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AL158211.2-201 | ENST00000607282 | 395 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC244196.2-201 | ENST00000621184 | 411 nt | APPRIS P1 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC140113.4-201 | ENST00000622087 | 222 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC097372.4-201 | ENST00000625025 | 466 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | MIR548A1HG-201 | ENST00000636739 | 558 nt | TSL 4 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC008013.2-202 | ENST00000637965 | 364 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | HNMT-202 | ENST00000280097 | 3295 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | CD200R1-204 | ENST00000471858 | 3679 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | AC010186.3-201 | ENST00000537616 | 2508 nt | TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | STON1-GTF2A1L-204 | ENST00000405008 | 3821 nt | APPRIS P1 TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | TES-202 | ENST00000393481 | 2763 nt | TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | LRRC9-202 | ENST00000445360 | 4717 nt | APPRIS P1 TSL 5 BASIC | 5.32 | □□□□□ -1.56 | | |
| ATG9A | Q7Z3C6 | MTUS1-228 | ENST00000544260 | 3650 nt | TSL 2 BASIC | 5.32 | □□□□□ -1.56 | | |