Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR3200-201ENST00000580767 85 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 AC116667.1-201ENST00000604855 2072 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 HSPE1P12-201ENST00000412576 301 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AL353748.1-201ENST00000440753 474 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 RPL23AP81-201ENST00000455252 467 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC008155.2-201ENST00000464337 397 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC110792.1-201ENST00000491826 472 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 OR51C1P-201ENST00000608504 942 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC006484.1-201ENST00000435086 1884 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 MIR200C-201ENST00000384980 68 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 SNORD96B-201ENST00000386148 79 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC117434.1-201ENST00000419971 836 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 RPL38P1-201ENST00000460914 211 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 ACTR3P3-201ENST00000480448 893 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC091905.2-201ENST00000623143 306 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AL672167.1-205ENST00000641112 3080 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 AC006042.3-201ENST00000454684 1469 ntBASIC5.13□□□□□ -1.59
CCDC88AQ3V6T2 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 CASC19-261ENST00000641853 1638 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 RPS20P21-201ENST00000466859 343 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 OR8I1P-201ENST00000529291 931 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AC005255.1-201ENST00000593748 216 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AL049634.3-201ENST00000604968 457 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AC015922.4-201ENST00000612568 690 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AL391261.4-201ENST00000616012 481 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 AL513548.1-201ENST00000562904 1724 ntBASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC88AQ3V6T2 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 RNU11-4P-201ENST00000391149 133 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 RPS26P2-201ENST00000440331 348 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AC124068.1-201ENST00000563131 678 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 SLC25A36P1-201ENST00000590111 465 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AC016957.2-201ENST00000616998 848 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AL354798.1-201ENST00000622505 329 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AC024560.2-201ENST00000507981 1497 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 MIR1911-201ENST00000410783 80 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AL139247.1-201ENST00000422768 325 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AP000907.1-201ENST00000428428 510 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 RPL23AP25-201ENST00000430973 463 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AL031584.1-201ENST00000447169 754 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 BNIP3P41-202ENST00000616656 861 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 FP236240.3-201ENST00000623061 327 ntBASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC88AQ3V6T2 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms