Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AP003730.1-201ENST00000524605 285 ntBASIC3.78□□□□□ -1.8
FOXF1Q12946 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXF1Q12946 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXF1Q12946 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXF1Q12946 CYP4A43P-201ENST00000568156 121 ntBASIC3.78□□□□□ -1.8
FOXF1Q12946 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXF1Q12946 AC064801.1-201ENST00000612025 407 ntBASIC3.78□□□□□ -1.8
FOXF1Q12946 AC083809.1-201ENST00000615051 472 ntBASIC3.78□□□□□ -1.8
FOXF1Q12946 MIR8059-201ENST00000620427 81 ntBASIC3.78□□□□□ -1.8
FOXF1Q12946 MIR6830-201ENST00000636015 70 ntBASIC3.78□□□□□ -1.8
FOXF1Q12946 AC011503.2-201ENST00000594230 1500 ntBASIC3.78□□□□□ -1.8
FOXF1Q12946 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXF1Q12946 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXF1Q12946 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXF1Q12946 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
FOXF1Q12946 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXF1Q12946 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
FOXF1Q12946 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
FOXF1Q12946 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.81
FOXF1Q12946 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXF1Q12946 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXF1Q12946 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXF1Q12946 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXF1Q12946 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXF1Q12946 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
FOXF1Q12946 SNORA62-201ENST00000365493 153 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 ADIG-201ENST00000373348 430 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXF1Q12946 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
FOXF1Q12946 AL607077.1-201ENST00000401718 499 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 ST13P16-201ENST00000401760 781 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXF1Q12946 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 AC004552.1-201ENST00000419089 348 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 COX6CP17-201ENST00000421389 185 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 AL353748.1-201ENST00000440753 474 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXF1Q12946 AL591363.1-201ENST00000450091 483 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 RNA5SP246-201ENST00000458909 119 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 RPS26P3-201ENST00000470205 348 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 AC090543.2-201ENST00000483963 348 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 AC004057.1-201ENST00000485827 348 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 RPS6P4-201ENST00000494693 758 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 SNORA31.9-201ENST00000516429 84 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 IFITM8P-201ENST00000522529 394 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXF1Q12946 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 AC005229.3-201ENST00000603438 323 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 MIR432-201ENST00000606207 94 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXF1Q12946 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.77□□□□□ -1.81
FOXF1Q12946 MIR6716-201ENST00000613413 80 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 AC006338.2-201ENST00000616864 791 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.77□□□□□ -1.81
FOXF1Q12946 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
FOXF1Q12946 OR52H1-202ENST00000641796 1061 ntBASIC3.77□□□□□ -1.81
FOXF1Q12946 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
FOXF1Q12946 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
FOXF1Q12946 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXF1Q12946 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXF1Q12946 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXF1Q12946 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXF1Q12946 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
FOXF1Q12946 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
FOXF1Q12946 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXF1Q12946 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.76□□□□□ -1.81
FOXF1Q12946 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.76□□□□□ -1.81
FOXF1Q12946 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
FOXF1Q12946 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
FOXF1Q12946 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.76□□□□□ -1.81
FOXF1Q12946 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 AC116667.1-201ENST00000604855 2072 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 AC093775.1-201ENST00000624154 1868 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.76□□□□□ -1.81
FOXF1Q12946 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXF1Q12946 ATP5F1P2-201ENST00000398143 760 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 RPS27AP11-201ENST00000402798 447 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 AC234781.4-201ENST00000419384 244 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXF1Q12946 UBE2V2P4-201ENST00000447495 259 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 TPT1P12-201ENST00000448968 492 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 AC104306.1-201ENST00000449702 371 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC3.76□□□□□ -1.81
FOXF1Q12946 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.76□□□□□ -1.81
FOXF1Q12946 RAD23BP3-201ENST00000454157 1152 ntBASIC3.76□□□□□ -1.81
FOXF1Q12946 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.76□□□□□ -1.81
FOXF1Q12946 RPL36AP13-201ENST00000457490 317 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms