Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.8□□□□□ -1.8
CHD3Q12873 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.8□□□□□ -1.8
CHD3Q12873 AP002360.3-201ENST00000607673 710 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 ZYXP1-201ENST00000617638 118 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AC009237.17-201ENST00000618111 748 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CHD3Q12873 AC107068.1-201ENST00000563286 4218 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CHD3Q12873 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CHD3Q12873 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHD3Q12873 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CHD3Q12873 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHD3Q12873 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.79□□□□□ -1.8
CHD3Q12873 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
CHD3Q12873 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.79□□□□□ -1.8
CHD3Q12873 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC3.79□□□□□ -1.8
CHD3Q12873 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CHD3Q12873 MIR670-201ENST00000390142 98 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHD3Q12873 CCDC75P1-201ENST00000469247 791 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 RPS4XP18-201ENST00000495480 763 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 AP001804.2-201ENST00000533932 910 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.79□□□□□ -1.8
CHD3Q12873 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.79□□□□□ -1.8
CHD3Q12873 AGGF1P6-201ENST00000569213 976 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 AC006116.5-201ENST00000591936 559 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 RNU6-84P-201ENST00000607737 102 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 AL133243.1-201ENST00000614487 366 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 AC005086.4-201ENST00000623065 213 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.79□□□□□ -1.8
CHD3Q12873 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.79□□□□□ -1.8
CHD3Q12873 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHD3Q12873 ARHGAP42P1-201ENST00000507474 1976 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHD3Q12873 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
CHD3Q12873 Z82217.1-201ENST00000625157 8149 ntBASIC3.79□□□□□ -1.8
CHD3Q12873 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CHD3Q12873 MAPK10-303ENST00000641324 3959 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 ATP5F1P3-201ENST00000397213 657 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 RN7SKP202-201ENST00000410439 330 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 RPL23AP26-201ENST00000412728 464 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.78□□□□□ -1.8
CHD3Q12873 RCC2P2-201ENST00000422174 918 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 FTH1P16-201ENST00000435241 552 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 PTMAP3-201ENST00000447474 330 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 MTND4LP2-201ENST00000502312 285 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.78□□□□□ -1.8
CHD3Q12873 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.78□□□□□ -1.8
CHD3Q12873 RPL21P7-201ENST00000557463 483 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.78□□□□□ -1.8
CHD3Q12873 AC124068.1-201ENST00000563131 678 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC133552.5-201ENST00000604266 540 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC073137.1-201ENST00000605636 634 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 MIR7154-201ENST00000620673 73 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC140479.6-201ENST00000633535 357 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 FP325313.1-201ENST00000638228 703 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CHD3Q12873 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 OR5P1P-201ENST00000299512 925 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.78□□□□□ -1.8
CHD3Q12873 MIR921-201ENST00000401133 56 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AL356968.2-201ENST00000412769 1257 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.78□□□□□ -1.8
CHD3Q12873 AL157831.1-201ENST00000426134 473 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 COX6CP15-201ENST00000426313 211 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 HMGB3P9-201ENST00000441799 583 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC005008.1-201ENST00000456151 612 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 RPL7L1P8-201ENST00000469911 741 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 UQCRHP4-201ENST00000471686 272 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 RPL23AP65-201ENST00000475608 468 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 UBA52P3-201ENST00000491303 382 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC026726.1-201ENST00000512859 601 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AP000889.1-201ENST00000530968 660 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
CHD3Q12873 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC3.78□□□□□ -1.8
CHD3Q12873 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC3.78□□□□□ -1.8
CHD3Q12873 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.78□□□□□ -1.8
CHD3Q12873 AC087499.8-201ENST00000578406 226 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC068790.5-201ENST00000602741 355 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 AC023762.1-201ENST00000603280 584 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 MIR6867-201ENST00000610636 67 ntBASIC3.78□□□□□ -1.8
CHD3Q12873 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
CHD3Q12873 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
CHD3Q12873 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
CHD3Q12873 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.78□□□□□ -1.8
CHD3Q12873 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHD3Q12873 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
CHD3Q12873 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.81
CHD3Q12873 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.77□□□□□ -1.81
CHD3Q12873 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.77□□□□□ -1.81
CHD3Q12873 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms