Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 ZBTB8OSP1-201ENST00000342688 498 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 RNA5SP435-201ENST00000364044 108 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 RNU6-877P-201ENST00000383868 107 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 Y_RNA.460-201ENST00000384255 102 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 MIR16-1-201ENST00000385271 89 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AP003170.5-201ENST00000397185 335 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 ERMN-204ENST00000409925 556 ntTSL 4 BASIC6.39□□□□□ -1.39
SOX4Q06945 Y_RNA.598-201ENST00000410480 95 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.39□□□□□ -1.39
SOX4Q06945 AC015977.1-201ENST00000418887 292 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 GAPDHP49-201ENST00000421421 961 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 HSPD1P12-201ENST00000429127 1069 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC6.39□□□□□ -1.39
SOX4Q06945 AL138787.1-202ENST00000437804 898 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 AC104306.1-201ENST00000449702 371 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 RPL31P15-201ENST00000449770 338 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 PPIAP20-201ENST00000449839 135 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC110749.1-201ENST00000462007 357 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC092757.1-201ENST00000467293 467 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC074386.1-201ENST00000476560 767 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 RPL23AP40-201ENST00000487630 390 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 RN7SL57P-201ENST00000493687 290 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 HMGN1P13-201ENST00000505795 138 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 RPL7L1P13-201ENST00000511702 739 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 RNY4P37-201ENST00000516225 96 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 SNORA18.6-201ENST00000516792 115 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.39□□□□□ -1.39
SOX4Q06945 RPS3AP23-202ENST00000574601 686 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 MIR4301-201ENST00000577203 66 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 MIR3671-201ENST00000580455 88 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 MEMO1P5-201ENST00000604810 406 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC010200.2-201ENST00000605098 235 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC6.39□□□□□ -1.39
SOX4Q06945 AP001506.1-201ENST00000615444 211 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC108479.2-201ENST00000617314 601 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC127024.6-201ENST00000621598 424 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AP003400.3-201ENST00000624904 346 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX4Q06945 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX4Q06945 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX4Q06945 AC015689.2-201ENST00000528172 1738 ntBASIC6.39□□□□□ -1.39
SOX4Q06945 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX4Q06945 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.39□□□□□ -1.39
SOX4Q06945 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX4Q06945 WBP11P1-201ENST00000562560 1931 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.38□□□□□ -1.39
SOX4Q06945 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.38□□□□□ -1.39
SOX4Q06945 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SOX4Q06945 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.38□□□□□ -1.39
SOX4Q06945 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX4Q06945 RNA5SP211-201ENST00000365516 117 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 RNU6-1227P-201ENST00000383981 107 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 SNORA17A-201ENST00000391185 133 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 AC087752.1-201ENST00000391360 558 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 AC016739.1-201ENST00000405359 345 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 AL512422.1-201ENST00000407033 553 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX4Q06945 RPS4XP5-201ENST00000419038 768 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 B3GALNT1P1-201ENST00000420569 975 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 AL009174.1-201ENST00000426577 416 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 LDHAP2-201ENST00000437325 985 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX4Q06945 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX4Q06945 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX4Q06945 AL161636.2-201ENST00000445179 927 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 DNAJB5P1-201ENST00000454004 806 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 RN7SL273P-201ENST00000481561 299 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 RPS29P25-201ENST00000481709 171 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 RPS3AP14-201ENST00000483907 780 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 AC108078.3-201ENST00000502633 489 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX4Q06945 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX4Q06945 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX4Q06945 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX4Q06945 AC105914.1-201ENST00000511798 226 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 SAP18P1-201ENST00000512058 390 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 AF131216.2-201ENST00000512316 564 ntBASIC6.38□□□□□ -1.39
SOX4Q06945 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.38□□□□□ -1.39
SOX4Q06945 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms