Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 AL358913.1-201ENST00000554342 121 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA1P55317 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.95□□□□□ -1.78
FOXA1P55317 AL451044.1-201ENST00000604867 238 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 AP000255.1-201ENST00000610276 676 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 MIR4727-201ENST00000622232 55 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 AP000346.3-201ENST00000622821 210 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC3.95□□□□□ -1.78
FOXA1P55317 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 AC093775.1-201ENST00000624154 1868 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 DDX18P3-201ENST00000404856 2007 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA1P55317 FAM3C2-201ENST00000312214 681 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 SNORD35B-201ENST00000363660 87 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 RN7SKP224-201ENST00000364140 325 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.94□□□□□ -1.78
FOXA1P55317 MIR192-201ENST00000384915 110 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA1P55317 NDUFA12P1-201ENST00000455914 406 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA1P55317 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA1P55317 AC007686.1-201ENST00000488511 463 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 AC138409.2-202ENST00000507274 458 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 AC108043.1-201ENST00000512696 574 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 AC099522.1-202ENST00000514718 367 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 GNRHR2P1-201ENST00000555315 631 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA1P55317 AC128687.2-201ENST00000609657 566 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA1P55317 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA1P55317 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.94□□□□□ -1.78
FOXA1P55317 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA1P55317 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
FOXA1P55317 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA1P55317 AL133243.3-201ENST00000617415 3004 ntBASIC3.94□□□□□ -1.78
FOXA1P55317 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
FOXA1P55317 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.93□□□□□ -1.78
FOXA1P55317 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.93□□□□□ -1.78
FOXA1P55317 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.93□□□□□ -1.78
FOXA1P55317 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 RNA5SP509-201ENST00000364577 119 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 AC011933.1-201ENST00000413334 321 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.93□□□□□ -1.78
FOXA1P55317 CHIAP3-201ENST00000423668 1133 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.93□□□□□ -1.78
FOXA1P55317 BTF3P10-201ENST00000433415 495 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.93□□□□□ -1.78
FOXA1P55317 AC009963.2-201ENST00000453431 138 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 Z95152.1-201ENST00000453556 656 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
FOXA1P55317 snoU13.1-201ENST00000459157 104 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 AC116533.1-201ENST00000459748 321 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 RPS29P22-201ENST00000472363 168 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 RN7SL860P-201ENST00000473738 223 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.93□□□□□ -1.78
FOXA1P55317 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.93□□□□□ -1.78
FOXA1P55317 PSMB7P1-201ENST00000556349 514 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.93□□□□□ -1.78
FOXA1P55317 AC022968.1-201ENST00000567372 442 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 MIR5684-201ENST00000585074 65 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.93□□□□□ -1.78
FOXA1P55317 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.93□□□□□ -1.78
FOXA1P55317 AL158196.1-201ENST00000616786 434 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 LINC00901.1-201ENST00000617252 152 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.93□□□□□ -1.78
FOXA1P55317 AP000843.1-201ENST00000624880 701 ntBASIC3.93□□□□□ -1.78
FOXA1P55317 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA1P55317 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.93□□□□□ -1.78
FOXA1P55317 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
FOXA1P55317 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
FOXA1P55317 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.92□□□□□ -1.78
FOXA1P55317 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
FOXA1P55317 AC011503.2-201ENST00000594230 1500 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.92□□□□□ -1.78
FOXA1P55317 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
FOXA1P55317 AC136624.1-201ENST00000400791 413 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 CBX1P3-201ENST00000413296 527 ntBASIC3.92□□□□□ -1.78
FOXA1P55317 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms