Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A4P53420 AL159169.3-201ENST00000608871 561 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.46□□□□□ -1.7
COL4A4P53420 AC015722.2-201ENST00000622210 551 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL4A4P53420 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A4P53420 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A4P53420 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A4P53420 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A4P53420 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.46□□□□□ -1.7
COL4A4P53420 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A4P53420 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.46□□□□□ -1.7
COL4A4P53420 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
COL4A4P53420 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A4P53420 RAB9AP3-201ENST00000412737 573 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A4P53420 RAB9AP1-201ENST00000449393 573 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 GAPDHP36-201ENST00000480688 918 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A4P53420 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL4A4P53420 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A4P53420 RNA5SP497-201ENST00000516081 97 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 AC006064.5-201ENST00000541782 248 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A4P53420 AC093524.1-201ENST00000564266 1094 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A4P53420 AL592436.1-201ENST00000605135 558 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 AC026979.4-201ENST00000606555 645 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A4P53420 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL4A4P53420 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL4A4P53420 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A4P53420 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A4P53420 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A4P53420 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A4P53420 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 Y_RNA.111-201ENST00000363248 100 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 AC007068.1-201ENST00000396690 844 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 VN1R8P-201ENST00000407739 893 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.45□□□□□ -1.7
COL4A4P53420 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A4P53420 CEACAMP1-201ENST00000434624 1035 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 RPL38P1-201ENST00000460914 211 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 AC008694.2-201ENST00000517591 306 ntBASIC4.45□□□□□ -1.7
COL4A4P53420 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.45□□□□□ -1.7
COL4A4P53420 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.45□□□□□ -1.7
COL4A4P53420 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A4P53420 USP9YP4-201ENST00000424401 1745 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.44□□□□□ -1.7
COL4A4P53420 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A4P53420 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
COL4A4P53420 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A4P53420 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A4P53420 RNA5SP175-201ENST00000364275 119 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 MIR218-2-201ENST00000385006 110 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A4P53420 RNA5SP146-201ENST00000410743 123 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A4P53420 AC104306.1-201ENST00000449702 371 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 RPS11P1-201ENST00000451072 473 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A4P53420 RPL23AP81-201ENST00000455252 467 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 AC007688.1-201ENST00000475592 759 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 PAICSP4-201ENST00000517543 1253 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A4P53420 IGLV3-26-201ENST00000520756 302 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A4P53420 AC107993.1-201ENST00000591343 684 ntBASIC4.44□□□□□ -1.7
COL4A4P53420 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.44□□□□□ -1.7
COL4A4P53420 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A4P53420 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
COL4A4P53420 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A4P53420 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A4P53420 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A4P53420 AC024560.2-201ENST00000507981 1497 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A4P53420 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A4P53420 AC067945.1-201ENST00000342609 618 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 MIR200C-201ENST00000384980 68 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.43□□□□□ -1.7
COL4A4P53420 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.43□□□□□ -1.7
COL4A4P53420 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 PDSS1P1-201ENST00000422953 1114 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 AP000907.1-201ENST00000428428 510 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 248.7 ms