Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 AC007529.1-201ENST00000418574 2178 ntBASIC4.16□□□□□ -1.74
CDX1P47902 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 AC139713.2-215ENST00000641428 5037 ntBASIC4.16□□□□□ -1.74
CDX1P47902 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 AC091046.3-201ENST00000631455 1574 ntBASIC4.16□□□□□ -1.74
CDX1P47902 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CDX1P47902 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 ATP5F1P2-201ENST00000398143 760 ntBASIC4.16□□□□□ -1.74
CDX1P47902 DBIP1-201ENST00000401435 260 ntBASIC4.16□□□□□ -1.74
CDX1P47902 RPL7P27-201ENST00000403775 720 ntBASIC4.16□□□□□ -1.74
CDX1P47902 RN7SKP16-201ENST00000410180 299 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AC009237.10-201ENST00000414112 510 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.16□□□□□ -1.74
CDX1P47902 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 BRWD1P3-201ENST00000428816 390 ntBASIC4.16□□□□□ -1.74
CDX1P47902 FABP7P2-201ENST00000429946 379 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.16□□□□□ -1.74
CDX1P47902 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.16□□□□□ -1.74
CDX1P47902 HMGB1P48-201ENST00000446155 598 ntBASIC4.16□□□□□ -1.74
CDX1P47902 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 AC233982.1-201ENST00000451247 436 ntBASIC4.16□□□□□ -1.74
CDX1P47902 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.16□□□□□ -1.74
CDX1P47902 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 UBA52P7-201ENST00000486088 380 ntBASIC4.16□□□□□ -1.74
CDX1P47902 RPS12P31-201ENST00000491419 398 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AC010374.2-201ENST00000512933 535 ntBASIC4.16□□□□□ -1.74
CDX1P47902 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 SNORD116-26-201ENST00000516006 96 ntBASIC4.16□□□□□ -1.74
CDX1P47902 RNA5SP92-201ENST00000516437 110 ntBASIC4.16□□□□□ -1.74
CDX1P47902 RN7SKP96-201ENST00000516948 297 ntBASIC4.16□□□□□ -1.74
CDX1P47902 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AC105031.1-201ENST00000518550 476 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.16□□□□□ -1.74
CDX1P47902 AP004607.2-201ENST00000533949 322 ntBASIC4.16□□□□□ -1.74
CDX1P47902 YWHABP2-201ENST00000540201 713 ntBASIC4.16□□□□□ -1.74
CDX1P47902 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 SERPINE4P-201ENST00000554978 281 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 NIFKP8-201ENST00000560500 874 ntBASIC4.16□□□□□ -1.74
CDX1P47902 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AC007448.1-201ENST00000582714 234 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 AC095055.1-201ENST00000603472 1113 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC005252.1-201ENST00000604518 1063 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC010857.1-201ENST00000606398 594 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC017076.1-201ENST00000607613 578 ntBASIC4.16□□□□□ -1.74
CDX1P47902 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.16□□□□□ -1.74
CDX1P47902 AC211433.2-201ENST00000608433 387 ntBASIC4.16□□□□□ -1.74
CDX1P47902 BX323046.1-201ENST00000610145 535 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AC135068.5-201ENST00000624197 983 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AL109659.3-201ENST00000624985 950 ntBASIC4.16□□□□□ -1.74
CDX1P47902 AL356118.1-201ENST00000635272 1078 ntBASIC4.16□□□□□ -1.74
CDX1P47902 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
CDX1P47902 AL049555.1-201ENST00000562834 1933 ntBASIC4.16□□□□□ -1.74
CDX1P47902 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 KPNA2P2-201ENST00000419546 1489 ntBASIC4.16□□□□□ -1.74
CDX1P47902 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.16□□□□□ -1.74
CDX1P47902 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.16□□□□□ -1.74
CDX1P47902 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.16□□□□□ -1.74
CDX1P47902 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
CDX1P47902 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.74
CDX1P47902 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
CDX1P47902 MTND4P26-201ENST00000415971 1359 ntBASIC4.15□□□□□ -1.74
CDX1P47902 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
CDX1P47902 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.15□□□□□ -1.74
CDX1P47902 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CDX1P47902 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
CDX1P47902 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.74
CDX1P47902 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CDX1P47902 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
CDX1P47902 RNU1-19P-201ENST00000363306 165 ntBASIC4.15□□□□□ -1.75
CDX1P47902 RNU6-353P-201ENST00000364266 108 ntBASIC4.15□□□□□ -1.75
CDX1P47902 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.15□□□□□ -1.75
CDX1P47902 RNU6-549P-201ENST00000384433 107 ntBASIC4.15□□□□□ -1.75
CDX1P47902 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CDX1P47902 SPTLC1P2-201ENST00000407089 121 ntBASIC4.15□□□□□ -1.75
CDX1P47902 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.15□□□□□ -1.75
CDX1P47902 RN7SKP278-201ENST00000410504 342 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms