Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.01□□□□□ -1.61
BRCA1P38398 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.01□□□□□ -1.61
BRCA1P38398 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 RNA5SP22-201ENST00000365393 109 ntBASIC5□□□□□ -1.61
BRCA1P38398 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5□□□□□ -1.61
BRCA1P38398 U1.1-201ENST00000384101 164 ntBASIC5□□□□□ -1.61
BRCA1P38398 AL080315.1-201ENST00000406055 466 ntBASIC5□□□□□ -1.61
BRCA1P38398 MIR1179-201ENST00000408703 91 ntBASIC5□□□□□ -1.61
BRCA1P38398 TRIM60P17-201ENST00000415181 719 ntBASIC5□□□□□ -1.61
BRCA1P38398 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5□□□□□ -1.61
BRCA1P38398 NPM1P34-201ENST00000428821 893 ntBASIC5□□□□□ -1.61
BRCA1P38398 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5□□□□□ -1.61
BRCA1P38398 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 PDSS1P2-201ENST00000449397 678 ntBASIC5□□□□□ -1.61
BRCA1P38398 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5□□□□□ -1.61
BRCA1P38398 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5□□□□□ -1.61
BRCA1P38398 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5□□□□□ -1.61
BRCA1P38398 AL731532.2-201ENST00000623542 1953 ntBASIC5□□□□□ -1.61
BRCA1P38398 ZNF833P-201ENST00000424938 1494 ntBASIC5□□□□□ -1.61
BRCA1P38398 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5□□□□□ -1.61
BRCA1P38398 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 HMGB3P19-201ENST00000403971 560 ntBASIC5□□□□□ -1.61
BRCA1P38398 MIR1911-201ENST00000410783 80 ntBASIC5□□□□□ -1.61
BRCA1P38398 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5□□□□□ -1.61
BRCA1P38398 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5□□□□□ -1.61
BRCA1P38398 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 MRPL48P1-201ENST00000445390 636 ntBASIC5□□□□□ -1.61
BRCA1P38398 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5□□□□□ -1.61
BRCA1P38398 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5□□□□□ -1.61
BRCA1P38398 RN7SKP13-201ENST00000515933 244 ntBASIC5□□□□□ -1.61
BRCA1P38398 RNA5SP179-201ENST00000517284 121 ntBASIC5□□□□□ -1.61
BRCA1P38398 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5□□□□□ -1.61
BRCA1P38398 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5□□□□□ -1.61
BRCA1P38398 HMGB2P1-201ENST00000591146 634 ntBASIC5□□□□□ -1.61
BRCA1P38398 AC015726.1-201ENST00000602353 681 ntBASIC5□□□□□ -1.61
BRCA1P38398 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5□□□□□ -1.61
BRCA1P38398 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5□□□□□ -1.61
BRCA1P38398 AC120036.2-201ENST00000509729 1474 ntBASIC5□□□□□ -1.61
BRCA1P38398 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5□□□□□ -1.61
BRCA1P38398 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 RNA5SP97-201ENST00000365006 84 ntBASIC4.99□□□□□ -1.61
BRCA1P38398 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
BRCA1P38398 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
BRCA1P38398 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.99□□□□□ -1.61
BRCA1P38398 SETP14-201ENST00000497538 873 ntBASIC4.99□□□□□ -1.61
BRCA1P38398 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC4.99□□□□□ -1.61
BRCA1P38398 AC104619.4-201ENST00000510773 249 ntBASIC4.99□□□□□ -1.61
BRCA1P38398 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 AC016550.3-201ENST00000515706 767 ntBASIC4.99□□□□□ -1.61
BRCA1P38398 RNU1-103P-201ENST00000516502 125 ntBASIC4.99□□□□□ -1.61
BRCA1P38398 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.99□□□□□ -1.61
BRCA1P38398 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.99□□□□□ -1.61
BRCA1P38398 AC132825.8-201ENST00000640783 297 ntBASIC4.99□□□□□ -1.61
BRCA1P38398 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
BRCA1P38398 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.99□□□□□ -1.61
BRCA1P38398 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC4.99□□□□□ -1.61
BRCA1P38398 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BRCA1P38398 PRO1804-201ENST00000623780 2050 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 OR52E6-202ENST00000379946 954 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.98□□□□□ -1.61
BRCA1P38398 AC106707.2-201ENST00000484182 374 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.98□□□□□ -1.61
BRCA1P38398 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.98□□□□□ -1.61
BRCA1P38398 AF001550.2-201ENST00000636643 217 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.98□□□□□ -1.61
BRCA1P38398 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
BRCA1P38398 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
BRCA1P38398 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.98□□□□□ -1.61
BRCA1P38398 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
BRCA1P38398 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
BRCA1P38398 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
BRCA1P38398 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
BRCA1P38398 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
BRCA1P38398 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.98□□□□□ -1.61
BRCA1P38398 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
BRCA1P38398 MIR490-201ENST00000384865 128 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
BRCA1P38398 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.98□□□□□ -1.61
BRCA1P38398 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.98□□□□□ -1.61
BRCA1P38398 OR6C71P-201ENST00000432580 913 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.98□□□□□ -1.61
BRCA1P38398 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.98□□□□□ -1.61
BRCA1P38398 RPS4XP12-201ENST00000461747 709 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 AC069304.1-201ENST00000491593 704 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.98□□□□□ -1.61
BRCA1P38398 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.98□□□□□ -1.61
BRCA1P38398 LSM3P2-201ENST00000551246 273 ntBASIC4.98□□□□□ -1.61
BRCA1P38398 AC009852.2-201ENST00000567898 485 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms