Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA9P31269 RN7SKP199-201ENST00000410325 305 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 NRBF2P2-201ENST00000413087 861 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 RPL6P29-201ENST00000414863 865 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 MFSD13B-201ENST00000420133 1290 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA9P31269 RPL23AP25-201ENST00000430973 463 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 MRPL50P1-201ENST00000431951 384 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA9P31269 DEFB109F-201ENST00000491870 277 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA9P31269 KCTD9P2-201ENST00000512203 1013 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA9P31269 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA9P31269 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA9P31269 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AC022882.1-201ENST00000532142 501 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA9P31269 AL121839.1-201ENST00000556233 1185 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 TVP23BP1-201ENST00000557500 617 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXA9P31269 RN7SL600P-201ENST00000581811 299 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AC022916.3-201ENST00000592961 742 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AL161912.3-201ENST00000605404 628 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AC099676.1-201ENST00000608886 657 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AL392048.1-201ENST00000613946 534 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 LINC00901.1-201ENST00000617252 152 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 AC091905.2-201ENST00000623143 306 ntBASIC4.55□□□□□ -1.68
HOXA9P31269 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA9P31269 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA9P31269 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA9P31269 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA9P31269 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA9P31269 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
HOXA9P31269 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA9P31269 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA9P31269 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 RNA5SP307-201ENST00000362863 116 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA9P31269 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA9P31269 RNU1-63P-201ENST00000383902 164 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 RPL5P19-201ENST00000404228 893 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 AL590806.1-201ENST00000415818 853 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA9P31269 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA9P31269 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA9P31269 DDX39BP2-208ENST00000453923 258 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 AC020593.1-201ENST00000507399 299 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA9P31269 HMGB1P19-201ENST00000517578 577 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 MED28P5-201ENST00000528254 438 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 DYNLL1P4-201ENST00000549314 266 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA9P31269 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA9P31269 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA9P31269 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA9P31269 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA9P31269 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA9P31269 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.54□□□□□ -1.68
HOXA9P31269 IQCB2P-201ENST00000401788 1633 ntBASIC4.54□□□□□ -1.68
HOXA9P31269 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 AC090971.4-201ENST00000560291 1800 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 RN7SKP235-201ENST00000410662 305 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 EIF1P3-201ENST00000423841 334 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA9P31269 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 RPS26P2-201ENST00000440331 348 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 AC044797.1-201ENST00000445744 679 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA9P31269 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 RPL23AP81-201ENST00000455252 467 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA9P31269 RNA5SP446-201ENST00000515955 82 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 AC034105.4-201ENST00000568304 277 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA9P31269 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA9P31269 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA9P31269 BNIP3P33-201ENST00000598912 569 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 AP002360.3-201ENST00000607673 710 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms