Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.26□□□□□ -1.73
CLDN9O95484 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.26□□□□□ -1.73
CLDN9O95484 AC073111.2-201ENST00000605657 1075 ntBASIC4.26□□□□□ -1.73
CLDN9O95484 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.26□□□□□ -1.73
CLDN9O95484 AP005019.3-201ENST00000620418 560 ntBASIC4.26□□□□□ -1.73
CLDN9O95484 AC119674.1-220ENST00000641502 1048 ntBASIC4.26□□□□□ -1.73
CLDN9O95484 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.26□□□□□ -1.73
CLDN9O95484 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
CLDN9O95484 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLDN9O95484 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CLDN9O95484 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLDN9O95484 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLDN9O95484 AC026951.1-201ENST00000559530 2459 ntBASIC4.26□□□□□ -1.73
CLDN9O95484 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
CLDN9O95484 AC105074.1-201ENST00000623380 3095 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 OR4K15-201ENST00000305051 1216 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 RNU1-108P-201ENST00000362556 161 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 RNU6-304P-201ENST00000364855 107 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 MIR23A-201ENST00000385245 73 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 GLULP6-201ENST00000399502 913 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 FABP12P1-201ENST00000401911 322 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AMZ2P2-201ENST00000406819 1057 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.25□□□□□ -1.73
CLDN9O95484 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.25□□□□□ -1.73
CLDN9O95484 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 CYCSP10-201ENST00000417973 294 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC004690.1-201ENST00000418216 328 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.25□□□□□ -1.73
CLDN9O95484 AL353597.2-202ENST00000434901 373 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC114495.1-201ENST00000441274 436 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.25□□□□□ -1.73
CLDN9O95484 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.25□□□□□ -1.73
CLDN9O95484 AL157827.1-201ENST00000447622 132 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 EIF4A1P11-201ENST00000451239 222 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AP002345.1-201ENST00000456493 928 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC053481.1-201ENST00000467217 306 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC007686.1-201ENST00000488511 463 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.25□□□□□ -1.73
CLDN9O95484 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.25□□□□□ -1.73
CLDN9O95484 PPBPP1-201ENST00000510807 373 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 RNU6-491P-201ENST00000516099 110 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 RNU6-1308P-201ENST00000516817 103 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.25□□□□□ -1.73
CLDN9O95484 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 PHBP17-201ENST00000528576 541 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.25□□□□□ -1.73
CLDN9O95484 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.25□□□□□ -1.73
CLDN9O95484 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.25□□□□□ -1.73
CLDN9O95484 AP001160.4-201ENST00000596971 382 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC005034.4-201ENST00000603612 899 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.25□□□□□ -1.73
CLDN9O95484 AL391834.1-201ENST00000609609 560 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AL161616.1-201ENST00000611867 286 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 MIR6780A-201ENST00000615089 68 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AL669942.2-201ENST00000620352 697 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CLDN9O95484 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 AP003497.2-201ENST00000624220 967 ntBASIC4.25□□□□□ -1.73
CLDN9O95484 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CLDN9O95484 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CLDN9O95484 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
CLDN9O95484 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLDN9O95484 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
CLDN9O95484 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.24□□□□□ -1.73
CLDN9O95484 DHX40P1-201ENST00000588725 1412 ntBASIC4.24□□□□□ -1.73
CLDN9O95484 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
CLDN9O95484 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CLDN9O95484 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 RNU6-31P-201ENST00000384388 108 ntBASIC4.24□□□□□ -1.73
CLDN9O95484 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CLDN9O95484 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLDN9O95484 MIR1911-201ENST00000410783 80 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms