Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.36□□□□□ -1.71
LMX1BO60663 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.36□□□□□ -1.71
LMX1BO60663 AL353898.1-201ENST00000444055 238 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LMX1BO60663 AC004980.3-201ENST00000447046 365 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.36□□□□□ -1.71
LMX1BO60663 TRY2P-201ENST00000448860 689 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AL096803.2-201ENST00000450032 677 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 CYCSP42-201ENST00000450823 238 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 HMGB1P5-202ENST00000451497 985 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.36□□□□□ -1.71
LMX1BO60663 AC092647.2-201ENST00000452998 253 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC010468.1-201ENST00000461022 817 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC097484.1-201ENST00000471148 389 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.36□□□□□ -1.71
LMX1BO60663 RN7SL441P-201ENST00000492388 296 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC010350.1-201ENST00000504908 231 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.36□□□□□ -1.71
LMX1BO60663 HMGB3P16-201ENST00000508037 287 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.36□□□□□ -1.71
LMX1BO60663 AC012339.2-201ENST00000523996 453 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.36□□□□□ -1.71
LMX1BO60663 AP002373.2-201ENST00000541631 1060 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.36□□□□□ -1.71
LMX1BO60663 AC116553.2-201ENST00000564203 463 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 MTCYBP28-201ENST00000566728 1132 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AP005136.1-201ENST00000579765 429 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.36□□□□□ -1.71
LMX1BO60663 AC124856.1-201ENST00000600819 896 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC025165.5-201ENST00000602802 578 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AL049844.2-201ENST00000604280 628 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AL451086.1-201ENST00000605596 223 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.36□□□□□ -1.71
LMX1BO60663 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.36□□□□□ -1.71
LMX1BO60663 AL121895.2-201ENST00000619558 447 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC078883.4-201ENST00000623218 367 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 AC068620.4-201ENST00000636730 1182 ntBASIC4.36□□□□□ -1.71
LMX1BO60663 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
LMX1BO60663 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.36□□□□□ -1.71
LMX1BO60663 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LMX1BO60663 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
LMX1BO60663 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LMX1BO60663 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LMX1BO60663 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.36□□□□□ -1.71
LMX1BO60663 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.36□□□□□ -1.71
LMX1BO60663 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 STX3-208ENST00000641815 3236 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 SALL4P2-201ENST00000423288 2910 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
LMX1BO60663 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 MIR192-201ENST00000384915 110 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 AL078599.1-201ENST00000402075 293 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 NUDT19P3-201ENST00000404698 555 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 RN7SKP114-201ENST00000410327 279 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AC092638.1-201ENST00000411966 1275 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 RPL26P37-201ENST00000411983 438 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 NPM1P40-201ENST00000412758 733 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AL356968.2-201ENST00000412769 1257 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.35□□□□□ -1.71
LMX1BO60663 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 COX6B1P1-201ENST00000415962 213 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 AL513175.2-201ENST00000422071 443 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 UBE2V1P1-201ENST00000430836 445 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.35□□□□□ -1.71
LMX1BO60663 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC084290.1-201ENST00000434995 374 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC069540.1-201ENST00000446320 988 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 HMGB1P4-201ENST00000455362 567 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 RPS17P2-201ENST00000461663 408 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LMX1BO60663 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.35□□□□□ -1.71
LMX1BO60663 RN7SL481P-201ENST00000477764 299 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 RPL7P16-201ENST00000479738 738 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AC090686.1-201ENST00000481577 749 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 AC118465.1-201ENST00000513820 1271 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 RNA5SP303-201ENST00000516192 130 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 RN7SKP260-201ENST00000516907 149 ntBASIC4.35□□□□□ -1.71
LMX1BO60663 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.35□□□□□ -1.71
LMX1BO60663 RPL23AP53-201ENST00000521854 457 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms