Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.06□□□□□ -1.6
SNX9Q9Y5X1 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SNX9Q9Y5X1 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SNX9Q9Y5X1 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SNX9Q9Y5X1 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SNX9Q9Y5X1 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SNX9Q9Y5X1 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC079741.1-201ENST00000321498 212 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC008549.2-201ENST00000333482 706 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 ARL4AP5-201ENST00000404372 599 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 RPS16P5-201ENST00000406501 404 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 RPL26P29-201ENST00000415623 438 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 ATG4AP1-201ENST00000416893 538 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 TRBV26OR9-2-201ENST00000432077 293 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AL359265.2-201ENST00000434367 631 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC004854.1-201ENST00000440356 349 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 GTF3AP5-201ENST00000442645 697 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC243772.1-201ENST00000451620 410 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AL513533.1-201ENST00000453728 415 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 RPL23AP72-201ENST00000492447 435 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 SUMO1P1-201ENST00000497904 306 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC090666.1-201ENST00000578241 445 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC233280.2-201ENST00000603917 1070 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AP001033.2-201ENST00000609701 1003 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 AC099654.9-201ENST00000637055 678 ntBASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
SNX9Q9Y5X1 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 MIR192-201ENST00000384915 110 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 SNORD65-201ENST00000391079 73 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 RN7SKP267-201ENST00000410381 285 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC140479.3-201ENST00000418944 1126 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 MTCYBP7-201ENST00000419540 1134 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 BX119904.1-201ENST00000432026 348 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC099063.2-201ENST00000446360 662 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 H2AFZP5-201ENST00000446960 382 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 OFD1P3Y-201ENST00000453312 783 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 RPS29P33-201ENST00000456717 146 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC092691.2-201ENST00000461787 803 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 RNU5A-7P-201ENST00000515979 116 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 RNA5SP228-201ENST00000516232 133 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC022882.1-201ENST00000532142 501 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 ZKSCAN7P1-201ENST00000543668 673 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC087888.1-201ENST00000550884 1254 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 GLRXP2-201ENST00000555594 321 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC025918.2-201ENST00000558683 763 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 RN7SL52P-201ENST00000584271 284 ntBASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.04□□□□□ -1.6
SNX9Q9Y5X1 AC073091.2-201ENST00000603205 907 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms