Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
SHROOM4Q9ULL8 CPHL1P-201ENST00000461341 3407 ntBASIC8.49□□□□□ -1.05
SHROOM4Q9ULL8 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 CASC19-206ENST00000641028 1430 ntBASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 AL080315.1-201ENST00000406055 466 ntBASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 GLS-204ENST00000409428 816 ntTSL 2 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 AC034244.2-201ENST00000514668 858 ntBASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 NELL2-211ENST00000548826 559 ntTSL 2 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 AL162574.2-201ENST00000614618 657 ntBASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 MIR6891-201ENST00000618788 93 ntBASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 AC017002.4-201ENST00000604721 1525 ntBASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
SHROOM4Q9ULL8 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 DHX9P1-201ENST00000436565 3076 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 FAR1P1-201ENST00000427163 934 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 HMGB3P5-201ENST00000428894 612 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 RPS20P4-201ENST00000461659 355 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 SSR3-208ENST00000496050 579 ntTSL 4 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AP003168.1-201ENST00000530091 307 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 RN7SL339P-201ENST00000580597 296 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AC074140.1-201ENST00000621617 208 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 AC068870.3-201ENST00000625077 2536 ntBASIC8.47□□□□□ -1.05
SHROOM4Q9ULL8 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 RNA5SP513-201ENST00000364648 118 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 RPL23AP38-201ENST00000423801 469 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 ARL4AP4-201ENST00000434170 518 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 AC008958.1-201ENST00000511047 682 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 AC026726.1-201ENST00000512859 601 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 AL121834.1-201ENST00000572284 509 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 RN7SL600P-201ENST00000581811 299 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 MIR4660-201ENST00000583549 74 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 uc_338.13-201ENST00000618243 179 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 AL163152.1-201ENST00000642001 374 ntBASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC8.46□□□□□ -1.05
SHROOM4Q9ULL8 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
SHROOM4Q9ULL8 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
SHROOM4Q9ULL8 RNA5SP187-201ENST00000384400 119 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 RPL21P43-201ENST00000425440 472 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 RPL23AP52-201ENST00000439311 478 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AL353748.1-201ENST00000440753 474 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 RNA5SP249-201ENST00000516127 99 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC122134.1-201ENST00000565664 1104 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC053481.4-201ENST00000583164 216 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC130352.1-201ENST00000602979 661 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC007529.1-201ENST00000418574 2178 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 LINC00622-201ENST00000562811 1570 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 UBBP2-201ENST00000376781 231 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 RPS26P4-201ENST00000431743 355 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC146944.2-203ENST00000502493 354 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 HMGB1P3-201ENST00000502802 616 ntBASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC8.45□□□□□ -1.06
SHROOM4Q9ULL8 AC021146.7-201ENST00000509604 775 ntBASIC8.45□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms