Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AL354943.1-201ENST00000572103 781 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 MIR7853-201ENST00000584820 132 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 MTND3P19-201ENST00000603825 345 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AL445423.1-201ENST00000609941 536 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AC244107.2-201ENST00000611773 76 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 ZNF652P1-201ENST00000442420 1309 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 ZNF733P-202ENST00000444809 1573 ntBASIC5.37□□□□□ -1.55
DKK3Q9UBP4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
DKK3Q9UBP4 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 OR14L1P-202ENST00000641545 3009 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 RNU1-87P-201ENST00000363727 170 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 ATP5HP3-201ENST00000396994 486 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AL034403.1-201ENST00000399414 885 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 RPL23AP59-201ENST00000399415 461 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC010385.1-201ENST00000412374 256 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 QRSL1P2-201ENST00000418582 964 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 RPP40P1-201ENST00000426762 456 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 GSTA7P-201ENST00000438425 448 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC073648.4-201ENST00000442655 781 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC012512.1-201ENST00000446594 718 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC092685.1-201ENST00000447960 1243 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 FAR2P1-206ENST00000449736 709 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC091685.2-201ENST00000454924 864 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 USP9YP25-201ENST00000457708 443 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 RN7SL197P-201ENST00000466981 299 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AP000797.2-201ENST00000475768 606 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 RN7SL222P-201ENST00000476452 299 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC058823.1-201ENST00000485315 474 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC091951.3-201ENST00000504093 246 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 RPS4XP20-201ENST00000505751 772 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AP005136.1-201ENST00000579765 429 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC015688.2-201ENST00000584523 262 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC095055.1-201ENST00000603472 1113 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC133552.5-201ENST00000604266 540 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC009027.1-201ENST00000604510 479 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC019131.2-201ENST00000609071 870 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC009237.15-201ENST00000610252 501 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 FRG1HP-204ENST00000617940 757 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 CYP4F35P-202ENST00000636121 390 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AC007671.2-201ENST00000637344 619 ntBASIC5.36□□□□□ -1.55
DKK3Q9UBP4 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.36□□□□□ -1.55
DKK3Q9UBP4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
DKK3Q9UBP4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
DKK3Q9UBP4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
DKK3Q9UBP4 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
DKK3Q9UBP4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
DKK3Q9UBP4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.35□□□□□ -1.55
DKK3Q9UBP4 AC025574.1-201ENST00000554784 1653 ntBASIC5.35□□□□□ -1.55
DKK3Q9UBP4 AC011493.1-201ENST00000596753 1632 ntBASIC5.35□□□□□ -1.55
DKK3Q9UBP4 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
DKK3Q9UBP4 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms