Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AL442128.2-201ENST00000620246 1824 ntBASIC6.33□□□□□ -1.4
SCAPERQ9BY12 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 FAP-203ENST00000443424 2598 ntTSL 2 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 EIF4A1P1-201ENST00000420241 934 ntBASIC6.33□□□□□ -1.4
SCAPERQ9BY12 SETP9-201ENST00000423837 832 ntBASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 RNA5SP103-201ENST00000459503 118 ntBASIC6.33□□□□□ -1.4
SCAPERQ9BY12 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AC006499.5-201ENST00000505037 514 ntBASIC6.33□□□□□ -1.4
SCAPERQ9BY12 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AC006064.5-201ENST00000541782 248 ntBASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC6.33□□□□□ -1.4
SCAPERQ9BY12 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 AC024560.2-201ENST00000507981 1497 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 ZNF285B-201ENST00000561698 1767 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 HSPE1P12-201ENST00000412576 301 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 RNU6-352P-201ENST00000516908 107 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 GTF2IP22-201ENST00000554443 182 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 HMGN2P47-201ENST00000559378 272 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 AC005255.1-201ENST00000593748 216 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 AC019176.2-201ENST00000611579 315 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 MIR8069-1-201ENST00000616627 86 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 MIR8069-2-201ENST00000621412 86 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 AC015871.5-202ENST00000623252 701 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
SCAPERQ9BY12 CASC19-284ENST00000642142 1868 ntBASIC6.32□□□□□ -1.4
SCAPERQ9BY12 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 RPS26P4-201ENST00000431743 355 ntBASIC6.31□□□□□ -1.4
SCAPERQ9BY12 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 RPL38P1-201ENST00000460914 211 ntBASIC6.31□□□□□ -1.4
SCAPERQ9BY12 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 NAT2-202ENST00000520116 716 ntTSL 3 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 AF131215.7-201ENST00000602443 707 ntBASIC6.31□□□□□ -1.4
SCAPERQ9BY12 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCAPERQ9BY12 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 OR4A15-201ENST00000314706 1035 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 MIR491-201ENST00000384877 84 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 RPL36AP10-201ENST00000421785 322 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 NPM1P34-201ENST00000428821 893 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 AL445433.1-201ENST00000457507 257 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 RPS29P19-201ENST00000479709 171 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 RN7SKP141-201ENST00000516167 338 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 FP236240.3-201ENST00000623061 327 ntBASIC6.3□□□□□ -1.4
SCAPERQ9BY12 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.3□□□□□ -1.4
SCAPERQ9BY12 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 AP001002.1-201ENST00000625148 1513 ntBASIC6.29□□□□□ -1.4
SCAPERQ9BY12 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCAPERQ9BY12 SNORA5A-201ENST00000384111 134 ntBASIC6.29□□□□□ -1.4
SCAPERQ9BY12 RN7SKP156-201ENST00000410308 342 ntBASIC6.29□□□□□ -1.4
SCAPERQ9BY12 AL139099.1-201ENST00000497398 403 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms