Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIM2P55344 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
LIM2P55344 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
LIM2P55344 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 AC008033.1-201ENST00000216407 1162 ntBASIC4.17□□□□□ -1.74
LIM2P55344 RNU1-94P-201ENST00000362627 173 ntBASIC4.17□□□□□ -1.74
LIM2P55344 RNA5SP22-201ENST00000365393 109 ntBASIC4.17□□□□□ -1.74
LIM2P55344 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.17□□□□□ -1.74
LIM2P55344 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIM2P55344 AL078604.1-201ENST00000404609 466 ntBASIC4.17□□□□□ -1.74
LIM2P55344 SNORA74C-2-201ENST00000411179 201 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 AL139095.3-201ENST00000419672 1203 ntBASIC4.17□□□□□ -1.74
LIM2P55344 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 SKP1P3-201ENST00000429280 487 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AC068287.1-201ENST00000430283 295 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 AP000936.3-201ENST00000438127 255 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AC114495.1-201ENST00000441274 436 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AL500527.1-201ENST00000448532 255 ntBASIC4.17□□□□□ -1.74
LIM2P55344 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.17□□□□□ -1.74
LIM2P55344 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.17□□□□□ -1.74
LIM2P55344 AC015795.1-201ENST00000513669 327 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AC008694.2-201ENST00000517591 306 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 AC068831.4-201ENST00000556118 109 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.17□□□□□ -1.74
LIM2P55344 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.17□□□□□ -1.74
LIM2P55344 AC079587.1-201ENST00000603846 277 ntBASIC4.17□□□□□ -1.74
LIM2P55344 AC242628.1-201ENST00000606810 391 ntBASIC4.17□□□□□ -1.74
LIM2P55344 Z98200.1-201ENST00000607298 470 ntBASIC4.17□□□□□ -1.74
LIM2P55344 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
LIM2P55344 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
LIM2P55344 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
LIM2P55344 AC021242.1-201ENST00000507315 2035 ntBASIC4.17□□□□□ -1.74
LIM2P55344 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
LIM2P55344 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.17□□□□□ -1.74
LIM2P55344 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
LIM2P55344 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.16□□□□□ -1.74
LIM2P55344 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.16□□□□□ -1.74
LIM2P55344 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
LIM2P55344 AC105074.1-201ENST00000623380 3095 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.16□□□□□ -1.74
LIM2P55344 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
LIM2P55344 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.16□□□□□ -1.74
LIM2P55344 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
LIM2P55344 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
LIM2P55344 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
LIM2P55344 OR5P1P-201ENST00000299512 925 ntBASIC4.16□□□□□ -1.74
LIM2P55344 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
LIM2P55344 AC067945.1-201ENST00000342609 618 ntBASIC4.16□□□□□ -1.74
LIM2P55344 RNA5SP447-201ENST00000363749 119 ntBASIC4.16□□□□□ -1.74
LIM2P55344 VN1R8P-201ENST00000407739 893 ntBASIC4.16□□□□□ -1.74
LIM2P55344 RN7SKP216-201ENST00000411050 312 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.16□□□□□ -1.74
LIM2P55344 ELOCP19-201ENST00000411919 318 ntBASIC4.16□□□□□ -1.74
LIM2P55344 RANP4-201ENST00000413361 655 ntBASIC4.16□□□□□ -1.74
LIM2P55344 DNAJC19P7-201ENST00000428811 344 ntBASIC4.16□□□□□ -1.74
LIM2P55344 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.16□□□□□ -1.74
LIM2P55344 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.16□□□□□ -1.74
LIM2P55344 AC023512.1-201ENST00000444513 499 ntBASIC4.16□□□□□ -1.74
LIM2P55344 NPM1P39-201ENST00000449818 867 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC022431.1-201ENST00000450941 438 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.16□□□□□ -1.74
LIM2P55344 PSMC1P13-201ENST00000458195 985 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC021205.1-201ENST00000468797 348 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC013356.1-201ENST00000489027 564 ntBASIC4.16□□□□□ -1.74
LIM2P55344 HMGB1P3-201ENST00000502802 616 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.16□□□□□ -1.74
LIM2P55344 ATP1B1P1-201ENST00000509767 915 ntBASIC4.16□□□□□ -1.74
LIM2P55344 HMGB1P19-201ENST00000517578 577 ntBASIC4.16□□□□□ -1.74
LIM2P55344 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.16□□□□□ -1.74
LIM2P55344 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.16□□□□□ -1.74
LIM2P55344 OR8G5-201ENST00000524943 1041 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.16□□□□□ -1.74
LIM2P55344 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.16□□□□□ -1.74
LIM2P55344 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.16□□□□□ -1.74
LIM2P55344 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.16□□□□□ -1.74
LIM2P55344 RPL23AP97-201ENST00000568955 471 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.16□□□□□ -1.74
LIM2P55344 MIR5096-201ENST00000583713 70 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC005191.1-201ENST00000603950 358 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC090948.1-201ENST00000607464 549 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AL035461.2-201ENST00000619201 524 ntBASIC4.16□□□□□ -1.74
LIM2P55344 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
LIM2P55344 AC079298.2-201ENST00000623885 459 ntBASIC4.16□□□□□ -1.74
LIM2P55344 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.16□□□□□ -1.74
LIM2P55344 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.16□□□□□ -1.74
LIM2P55344 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms