Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
MSX1P28360 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 ZNF652P1-201ENST00000442420 1309 ntBASIC6.47□□□□□ -1.37
MSX1P28360 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSX1P28360 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSX1P28360 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSX1P28360 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
MSX1P28360 IMMTP1-201ENST00000435590 2219 ntBASIC6.46□□□□□ -1.37
MSX1P28360 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
MSX1P28360 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC6.46□□□□□ -1.37
MSX1P28360 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC6.46□□□□□ -1.37
MSX1P28360 AC022507.1-201ENST00000548349 1505 ntBASIC6.46□□□□□ -1.37
MSX1P28360 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSX1P28360 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX1P28360 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
MSX1P28360 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 Y_RNA.112-201ENST00000363250 102 ntBASIC6.46□□□□□ -1.38
MSX1P28360 RNA5SP114-201ENST00000363780 113 ntBASIC6.46□□□□□ -1.38
MSX1P28360 RN7SKP55-201ENST00000364888 307 ntBASIC6.46□□□□□ -1.38
MSX1P28360 Y_RNA.301-201ENST00000364990 103 ntBASIC6.46□□□□□ -1.38
MSX1P28360 MDM4-202ENST00000367180 547 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX1P28360 RN7SKP62-201ENST00000384539 329 ntBASIC6.46□□□□□ -1.38
MSX1P28360 RNU6-1222P-201ENST00000384615 107 ntBASIC6.46□□□□□ -1.38
MSX1P28360 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX1P28360 RNU6-985P-201ENST00000410182 104 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC078974.1-201ENST00000411597 223 ntBASIC6.46□□□□□ -1.38
MSX1P28360 MTCYBP10-201ENST00000424905 650 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX1P28360 AC079781.2-201ENST00000446424 169 ntBASIC6.46□□□□□ -1.38
MSX1P28360 VN1R38P-201ENST00000450265 887 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX1P28360 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX1P28360 RPL23AP12-201ENST00000467573 473 ntBASIC6.46□□□□□ -1.38
MSX1P28360 RPS15AP17-201ENST00000470598 390 ntBASIC6.46□□□□□ -1.38
MSX1P28360 RPL23AP71-201ENST00000470966 469 ntBASIC6.46□□□□□ -1.38
MSX1P28360 RPS16P9-201ENST00000477220 427 ntBASIC6.46□□□□□ -1.38
MSX1P28360 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX1P28360 SNRPCP11-201ENST00000492453 205 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC025164.1-201ENST00000496249 478 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX1P28360 COX6B1P6-201ENST00000522347 255 ntBASIC6.46□□□□□ -1.38
MSX1P28360 HSP90AA2P-201ENST00000530115 2196 ntBASIC6.46□□□□□ -1.38
MSX1P28360 HSPE1P3-201ENST00000559254 309 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC026458.1-201ENST00000564330 438 ntBASIC6.46□□□□□ -1.38
MSX1P28360 ULK4P1-202ENST00000565174 503 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC098848.2-201ENST00000588023 330 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC092032.1-201ENST00000603090 165 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX1P28360 AC063962.1-201ENST00000608199 521 ntBASIC6.46□□□□□ -1.38
MSX1P28360 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX1P28360 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.46□□□□□ -1.38
MSX1P28360 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 AC099494.2-201ENST00000623371 978 ntBASIC6.46□□□□□ -1.38
MSX1P28360 AC087894.3-201ENST00000623682 349 ntBASIC6.46□□□□□ -1.38
MSX1P28360 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.46□□□□□ -1.38
MSX1P28360 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 AL161901.1-201ENST00000624954 3425 ntBASIC6.46□□□□□ -1.38
MSX1P28360 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
MSX1P28360 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC6.46□□□□□ -1.38
MSX1P28360 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSX1P28360 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 AL121949.2-201ENST00000403446 1548 ntBASIC6.45□□□□□ -1.38
MSX1P28360 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX1P28360 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
MSX1P28360 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX1P28360 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
MSX1P28360 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms