Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 OR2A20P-201ENST00000479887 2913 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 MIR369-201ENST00000362155 70 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RNU6-343P-201ENST00000364709 104 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 SNORA51.6-201ENST00000384151 125 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 MIR137-201ENST00000385223 102 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AL391419.1-201ENST00000398901 1275 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RNU4-26P-201ENST00000410270 107 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RNA5SP115-201ENST00000411160 107 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 PRELID3BP11-201ENST00000414230 479 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RAC1P4-201ENST00000419413 579 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RPS15AP12-201ENST00000419498 388 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC007283.2-201ENST00000424739 197 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RPL37P1-201ENST00000432310 284 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 IPO7P1-201ENST00000442031 636 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 LAPTM4BP1-201ENST00000447781 690 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 MEMO1P4-201ENST00000453590 386 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 SNORA81.1-201ENST00000458922 177 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC027575.1-201ENST00000481064 460 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 SUMO2P4-201ENST00000504193 276 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RNU4-29P-201ENST00000515943 174 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC026464.5-201ENST00000562497 722 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 LARP7P2-201ENST00000575306 125 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC006270.2-201ENST00000578523 652 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC016925.2-201ENST00000605108 242 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AL132822.1-201ENST00000617063 513 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 LARP1BP1-201ENST00000506036 1359 ntBASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 MFSD8-217ENST00000641178 4374 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 OR51A10P-201ENST00000307165 937 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 STAG3L4-201ENST00000352103 530 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 Y_RNA.445-201ENST00000384168 102 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 ARF4P3-201ENST00000397387 509 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 RNU6-193P-201ENST00000410977 107 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 AL022100.1-202ENST00000421214 548 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 MYL6P3-201ENST00000436904 432 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 AC097359.1-201ENST00000447946 463 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 AP000893.1-201ENST00000474462 794 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 AC068587.1-201ENST00000483613 781 ntBASIC7.29□□□□□ -1.24
LIMD1Q9UGP4 RAD51AP1P1-201ENST00000484195 1001 ntBASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms