Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 MIR6891-201ENST00000618788 93 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC015804.1-201ENST00000622935 435 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 PHACTR2P1-201ENST00000605639 1414 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 ICE2P1-201ENST00000512800 1849 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RNA5SP372-201ENST00000390836 115 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC015795.1-201ENST00000513669 327 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 SMG1P6-201ENST00000532337 2930 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RNU4-44P-201ENST00000363050 141 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RNU6-628P-201ENST00000410675 107 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RN7SKP284-201ENST00000411002 343 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RAB9AP3-201ENST00000412737 573 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 EIF4A1P1-201ENST00000420241 934 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 PDSS1P1-201ENST00000422953 1114 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RAB9AP1-201ENST00000449393 573 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AL162591.2-201ENST00000449634 317 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC090948.2-201ENST00000607363 564 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RNU4-89P-201ENST00000607443 133 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 FAM27D1-201ENST00000612308 341 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC073073.2-201ENST00000609827 2578 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 OR2AH1P-201ENST00000425717 928 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 RN7SKP13-201ENST00000515933 244 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AL049830.4-201ENST00000555149 351 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC027455.1-201ENST00000574104 594 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC090181.2-201ENST00000602975 672 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 BNIP3P41-202ENST00000616656 861 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC091959.2-201ENST00000477363 321 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC1.33□□□□□ -2.2
SYNE1Q8NF91 AC243960.7-201ENST00000623532 707 ntBASIC1.33□□□□□ -2.2
SYNE1Q8NF91 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 FAP-203ENST00000443424 2598 ntTSL 2 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AC017079.1-201ENST00000333650 415 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AC114495.1-201ENST00000441274 436 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 RGS5-218ENST00000526176 574 ntTSL 4 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 Z95327.3-201ENST00000610385 572 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AC015914.2-201ENST00000618167 288 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 SCARNA15.3-201ENST00000626315 122 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 SCARNA4.1-201ENST00000628597 123 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 U3.53-201ENST00000628922 216 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 MIR492-201ENST00000638676 116 ntBASIC1.32□□□□□ -2.2
SYNE1Q8NF91 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC1.32□□□□□ -2.2
SYNE1Q8NF91 AL356387.2-201ENST00000422272 243 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms