Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 AL355488.2-201ENST00000609909 2850 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC006042.3-201ENST00000454684 1469 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.63□□□□□ -1.51
USP39Q53GS9 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 Z95114.1-201ENST00000624264 14574 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.63□□□□□ -1.51
USP39Q53GS9 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.63□□□□□ -1.51
USP39Q53GS9 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.63□□□□□ -1.51
USP39Q53GS9 RN7SKP115-201ENST00000363177 317 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 U8.4-201ENST00000363626 134 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AL672167.2-201ENST00000377164 879 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.63□□□□□ -1.51
USP39Q53GS9 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 RN7SKP279-201ENST00000411383 298 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AL139128.1-201ENST00000413921 941 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 EIF4A1P1-201ENST00000420241 934 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.63□□□□□ -1.51
USP39Q53GS9 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 OR2B8P-201ENST00000432841 938 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 VN1R54P-201ENST00000435210 1049 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.63□□□□□ -1.51
USP39Q53GS9 AC092641.1-201ENST00000440229 772 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AL606662.1-201ENST00000445763 553 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 CASP3P1-201ENST00000446037 609 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 SEPT14P24-201ENST00000447236 180 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC5.63□□□□□ -1.51
USP39Q53GS9 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.63□□□□□ -1.51
USP39Q53GS9 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AC104763.1-201ENST00000475274 360 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC5.63□□□□□ -1.51
USP39Q53GS9 NDUFB5P1-201ENST00000508134 564 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AC105384.2-201ENST00000508433 640 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.63□□□□□ -1.51
USP39Q53GS9 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.63□□□□□ -1.51
USP39Q53GS9 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.63□□□□□ -1.51
USP39Q53GS9 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.63□□□□□ -1.51
USP39Q53GS9 DUXAP1-201ENST00000556632 463 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.63□□□□□ -1.51
USP39Q53GS9 MIR4646-201ENST00000580775 63 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 MIR548S-201ENST00000581352 82 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AL606834.2-201ENST00000602954 668 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.63□□□□□ -1.51
USP39Q53GS9 AP002360.3-201ENST00000607673 710 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AC000068.2-201ENST00000608816 460 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AL162574.1-201ENST00000615702 950 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.63□□□□□ -1.51
USP39Q53GS9 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.63□□□□□ -1.51
USP39Q53GS9 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 NCLP2-201ENST00000416078 1462 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.63□□□□□ -1.51
USP39Q53GS9 ZNF849P-201ENST00000594711 1566 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.63□□□□□ -1.51
USP39Q53GS9 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.63□□□□□ -1.51
USP39Q53GS9 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 AL132640.2-201ENST00000559968 1698 ntBASIC5.63□□□□□ -1.51
USP39Q53GS9 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP39Q53GS9 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.63□□□□□ -1.51
USP39Q53GS9 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP39Q53GS9 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
USP39Q53GS9 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP39Q53GS9 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.62□□□□□ -1.51
USP39Q53GS9 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AC140134.1-201ENST00000511830 3544 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.62□□□□□ -1.51
USP39Q53GS9 FAM3C2-201ENST00000312214 681 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC5.62□□□□□ -1.51
USP39Q53GS9 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP39Q53GS9 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.62□□□□□ -1.51
USP39Q53GS9 U3.23-201ENST00000391132 200 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP39Q53GS9 AC098592.2-201ENST00000413158 265 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AL161449.1-201ENST00000414531 1199 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AC098592.1-201ENST00000419352 333 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 GTF2IP2-201ENST00000424290 697 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AL590762.4-201ENST00000425885 253 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 FAM96AP1-201ENST00000430879 482 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.62□□□□□ -1.51
USP39Q53GS9 AL139415.2-201ENST00000431968 163 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.62□□□□□ -1.51
USP39Q53GS9 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC5.62□□□□□ -1.51
USP39Q53GS9 UBE2V1P7-201ENST00000446395 340 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.62□□□□□ -1.51
USP39Q53GS9 AC091685.2-201ENST00000454924 864 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AL109741.2-201ENST00000455561 343 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.62□□□□□ -1.51
USP39Q53GS9 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP39Q53GS9 AK4P6-201ENST00000505168 528 ntBASIC5.62□□□□□ -1.51
USP39Q53GS9 HPRT1P2-201ENST00000505250 544 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms