Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL157770.1-201ENST00000623049 439 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC004943.3-201ENST00000624116 600 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC092608.3-201ENST00000625017 386 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 CASC19-206ENST00000641028 1430 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 SMG1P7-201ENST00000565246 2704 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL513185.3-201ENST00000433335 1300 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RNA5SP183-201ENST00000362452 119 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 SNORA74A-201ENST00000364089 198 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RNU6-707P-201ENST00000364647 95 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 OR1L6-202ENST00000373684 1044 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RNU6-157P-201ENST00000383957 107 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC093719.1-202ENST00000392735 373 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AL590290.1-201ENST00000405336 380 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RNU6-575P-201ENST00000411326 105 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RPL7P53-201ENST00000421245 739 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 GAPDHP49-201ENST00000421421 961 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 FAM96AP1-201ENST00000430879 482 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RPS24P8-201ENST00000431490 402 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 PTMAP6-201ENST00000439110 327 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RPS26P30-201ENST00000443431 335 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 MTND1P29-201ENST00000448112 647 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RSL24D1P3-201ENST00000449255 495 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC079841.1-201ENST00000481228 950 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RN7SL447P-201ENST00000494711 245 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 RPS24P16-201ENST00000497294 392 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 MTND1P22-201ENST00000510572 951 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC093755.1-201ENST00000512950 1023 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 IGJP1-201ENST00000522682 475 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC015726.1-201ENST00000602353 681 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AP002505.2-201ENST00000623585 696 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC139792.2-201ENST00000624218 587 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 SAMMSON-227ENST00000642114 1199 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 AP005901.5-201ENST00000545779 1796 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 ZNF736P9Y-201ENST00000439586 1345 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 MRRFP1-201ENST00000435941 1675 ntBASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTCHD3Q3KNS1 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC002525.1-201ENST00000624392 1622 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 OR9G4-201ENST00000302957 984 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms