Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC092905.1-201ENST00000467527 949 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC096741.1-201ENST00000472250 846 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
HLA-DMBP28068 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC008694.2-201ENST00000517591 306 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC008759.1-201ENST00000589783 983 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC068790.4-201ENST00000602474 263 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 BPIFA4P-203ENST00000603168 689 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC008638.3-201ENST00000603341 463 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC093765.1-201ENST00000603758 881 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC008745.1-201ENST00000604064 271 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC007546.2-201ENST00000623996 360 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 LINC01808-202ENST00000641680 1116 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
HLA-DMBP28068 LINC00622-201ENST00000562811 1570 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 AL078604.1-201ENST00000404609 466 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC009302.1-201ENST00000417147 390 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 ARAFP1-201ENST00000422172 605 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 NIPA2P1-201ENST00000426223 976 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 NPM1P26-201ENST00000426339 738 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 SKP1P3-201ENST00000429280 487 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 UBE2V1P3-201ENST00000439651 417 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AL353748.1-201ENST00000440753 474 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 TXNP2-201ENST00000443918 295 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 RPL23AP43-201ENST00000446445 471 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 CEACAMP6-201ENST00000452007 574 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 PSMC1P13-201ENST00000458195 985 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 NDUFA5P9-201ENST00000472609 340 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC037198.2-201ENST00000478845 733 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AK3P4-201ENST00000504283 583 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC025423.2-201ENST00000537570 439 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 RN7SL690P-201ENST00000582087 240 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC020915.5-201ENST00000596836 964 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC068790.5-201ENST00000602741 355 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC025946.2-201ENST00000603398 234 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AL161912.3-201ENST00000605404 628 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 AC004241.3-201ENST00000611728 517 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 ASNSP1-201ENST00000518311 1939 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HLA-DMBP28068 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 DHX40P1-201ENST00000588725 1412 ntBASIC3.36□□□□□ -1.87
HLA-DMBP28068 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HLA-DMBP28068 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 OR4K15-201ENST00000305051 1216 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 RNU1-32P-201ENST00000363937 159 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 MIR93-201ENST00000385024 80 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AL049697.2-201ENST00000403708 294 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 MIR1911-201ENST00000410783 80 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 GSTM3P2-201ENST00000412746 530 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC062016.2-201ENST00000420950 676 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms