Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.3□□□□□ -1.56
BDNFP23560 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
BDNFP23560 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
BDNFP23560 AC103591.2-201ENST00000265259 766 ntBASIC5.3□□□□□ -1.56
BDNFP23560 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
BDNFP23560 RN7SKP103-201ENST00000363848 320 ntBASIC5.3□□□□□ -1.56
BDNFP23560 DNAJC19P6-201ENST00000401853 280 ntBASIC5.3□□□□□ -1.56
BDNFP23560 RNU2-72P-201ENST00000411175 163 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 COX6B1P1-201ENST00000415962 213 ntBASIC5.3□□□□□ -1.56
BDNFP23560 RPS12P23-201ENST00000419579 400 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.3□□□□□ -1.56
BDNFP23560 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.3□□□□□ -1.56
BDNFP23560 UBE2V1P5-201ENST00000440070 405 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC004980.3-201ENST00000447046 365 ntBASIC5.3□□□□□ -1.56
BDNFP23560 OR52E3P-201ENST00000452083 936 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.3□□□□□ -1.56
BDNFP23560 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.3□□□□□ -1.56
BDNFP23560 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.3□□□□□ -1.56
BDNFP23560 RPL7P16-201ENST00000479738 738 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC5.3□□□□□ -1.56
BDNFP23560 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.3□□□□□ -1.56
BDNFP23560 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.3□□□□□ -1.56
BDNFP23560 AC021006.3-201ENST00000530771 192 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC139103.1-201ENST00000534696 1030 ntBASIC5.3□□□□□ -1.56
BDNFP23560 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 PRPF19P1-201ENST00000584766 898 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.3□□□□□ -1.56
BDNFP23560 FAM25E-202ENST00000608562 189 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC096586.1-201ENST00000610267 561 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AC091932.2-201ENST00000623014 291 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AL596275.2-204ENST00000641628 552 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AL596275.2-206ENST00000641957 626 ntBASIC5.3□□□□□ -1.56
BDNFP23560 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
BDNFP23560 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
BDNFP23560 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.3□□□□□ -1.56
BDNFP23560 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.29□□□□□ -1.56
BDNFP23560 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
BDNFP23560 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
BDNFP23560 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
BDNFP23560 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
BDNFP23560 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
BDNFP23560 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
BDNFP23560 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.29□□□□□ -1.56
BDNFP23560 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
BDNFP23560 RNU6-1005P-201ENST00000384519 107 ntBASIC5.29□□□□□ -1.56
BDNFP23560 MIR708-201ENST00000390708 88 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AP002784.2-201ENST00000397300 549 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AL021331.1-201ENST00000402817 582 ntBASIC5.29□□□□□ -1.56
BDNFP23560 PRRC2CP1-201ENST00000404428 159 ntBASIC5.29□□□□□ -1.56
BDNFP23560 SNORA11C-201ENST00000408532 129 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AL158050.1-201ENST00000416077 457 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC5.29□□□□□ -1.56
BDNFP23560 RBMY2KP-201ENST00000418221 992 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AL136231.1-201ENST00000429407 730 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.29□□□□□ -1.56
BDNFP23560 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.29□□□□□ -1.56
BDNFP23560 AL772161.1-201ENST00000439130 476 ntBASIC5.29□□□□□ -1.56
BDNFP23560 RPS29P9-201ENST00000440360 171 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AC009263.1-201ENST00000441193 1239 ntBASIC5.29□□□□□ -1.56
BDNFP23560 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
BDNFP23560 H2AFZP5-201ENST00000446960 382 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.29□□□□□ -1.56
BDNFP23560 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.29□□□□□ -1.56
BDNFP23560 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.29□□□□□ -1.56
BDNFP23560 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.29□□□□□ -1.56
BDNFP23560 AC083982.1-201ENST00000485679 344 ntBASIC5.29□□□□□ -1.56
BDNFP23560 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.29□□□□□ -1.56
BDNFP23560 AC008885.2-201ENST00000509506 930 ntBASIC5.29□□□□□ -1.56
BDNFP23560 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.29□□□□□ -1.56
BDNFP23560 SNORA26.10-201ENST00000516427 141 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC5.29□□□□□ -1.56
BDNFP23560 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC5.29□□□□□ -1.56
BDNFP23560 UBTFL9-201ENST00000534504 1148 ntBASIC5.29□□□□□ -1.56
BDNFP23560 GCSHP4-201ENST00000538792 439 ntBASIC5.29□□□□□ -1.56
BDNFP23560 PCNPP1-201ENST00000552501 511 ntBASIC5.29□□□□□ -1.56
BDNFP23560 NDUFB4P11-201ENST00000560510 395 ntBASIC5.29□□□□□ -1.56
BDNFP23560 MIR4480-201ENST00000582492 71 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AC012254.4-201ENST00000588843 273 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.29□□□□□ -1.56
BDNFP23560 AC005377.1-201ENST00000605126 456 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AC005084.1-201ENST00000605160 304 ntBASIC5.29□□□□□ -1.56
BDNFP23560 AL022394.1-201ENST00000606979 292 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms