Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MIR3065-201ENST00000390137 79 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 AC093719.1-202ENST00000392735 373 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 RN7SKP222-201ENST00000410651 315 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 BTF3P9-201ENST00000418784 283 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.85□□□□□ -1.63
CLDN3O15551 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.85□□□□□ -1.63
CLDN3O15551 CLIC4P1-201ENST00000453177 535 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.85□□□□□ -1.63
CLDN3O15551 RPL23AP24-201ENST00000458203 385 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.85□□□□□ -1.63
CLDN3O15551 RN7SL810P-201ENST00000493031 276 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 CEACAMP10-202ENST00000495431 496 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 OR51K1P-201ENST00000510214 950 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.85□□□□□ -1.63
CLDN3O15551 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.85□□□□□ -1.63
CLDN3O15551 CYCSP28-201ENST00000534284 321 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN3O15551 RPL21P7-201ENST00000557463 483 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.85□□□□□ -1.63
CLDN3O15551 MIR6891-201ENST00000618788 93 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN3O15551 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN3O15551 LINC01355-201ENST00000566551 5444 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 BX005019.1-201ENST00000561881 1810 ntBASIC4.85□□□□□ -1.63
CLDN3O15551 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN3O15551 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN3O15551 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.85□□□□□ -1.63
CLDN3O15551 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN3O15551 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.85□□□□□ -1.63
CLDN3O15551 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.85□□□□□ -1.63
CLDN3O15551 CASC19-204ENST00000641001 2055 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC009313.2-201ENST00000417893 1941 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN3O15551 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.84□□□□□ -1.63
CLDN3O15551 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN3O15551 OR5P1P-201ENST00000299512 925 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CLDN3O15551 RNU1-20P-201ENST00000363314 162 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 RNU6-225P-201ENST00000384613 103 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AL512430.2-201ENST00000406786 339 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 VDAC1P9-201ENST00000412766 841 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.84□□□□□ -1.63
CLDN3O15551 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN3O15551 AC007563.3-201ENST00000433233 371 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC092447.2-201ENST00000435487 669 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.84□□□□□ -1.63
CLDN3O15551 HMGB3P9-201ENST00000441799 583 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CLDN3O15551 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN3O15551 EIF2S2P2-201ENST00000447161 982 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 PTMAP3-201ENST00000447474 330 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN3O15551 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN3O15551 VN1R32P-201ENST00000452234 905 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN3O15551 PSMC1P13-201ENST00000458195 985 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 RN7SL817P-201ENST00000480777 288 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC108022.1-201ENST00000493466 478 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC025674.1-201ENST00000507074 324 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC093840.1-201ENST00000511599 336 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC021146.3-201ENST00000511911 260 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.84□□□□□ -1.63
CLDN3O15551 AC108471.1-201ENST00000513977 287 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC104997.1-201ENST00000519761 717 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN3O15551 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.84□□□□□ -1.63
CLDN3O15551 OR8G5-201ENST00000524943 1041 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN3O15551 AP002360.3-201ENST00000607673 710 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 AC005021.1-201ENST00000608730 355 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN3O15551 MAPK10-349ENST00000641767 3661 ntBASIC4.84□□□□□ -1.63
CLDN3O15551 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN3O15551 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CLDN3O15551 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN3O15551 AC093535.2-201ENST00000624769 2326 ntBASIC4.84□□□□□ -1.64
CLDN3O15551 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CLDN3O15551 SPATA2P1-201ENST00000431223 2055 ntBASIC4.84□□□□□ -1.64
CLDN3O15551 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.84□□□□□ -1.64
CLDN3O15551 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.84□□□□□ -1.64
CLDN3O15551 AP001273.1-201ENST00000624493 3152 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN3O15551 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN3O15551 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN3O15551 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 IL6STP1-201ENST00000346911 1020 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN3O15551 AL592293.2-201ENST00000422292 996 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 AC023141.6-201ENST00000429418 337 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 RPS29P17-201ENST00000430795 166 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 AC016712.1-201ENST00000431088 378 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 ARL4AP3-201ENST00000441452 574 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 AL353898.1-201ENST00000444055 238 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 RPL7P33-201ENST00000444159 742 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN3O15551 DHFRP3-201ENST00000455595 559 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 AC005008.1-201ENST00000456151 612 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 AC011276.1-201ENST00000469688 323 ntBASIC4.83□□□□□ -1.64
CLDN3O15551 RPL23AP65-201ENST00000475608 468 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms